Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113474129

Identifier: 113474129

GI number: 113474129

Start: 356894

End: 357769

Strand: Direct

Name: 113474129

Synonym: Tery_0229

Alternate gene names: NA

Gene position: 356894-357769 (Clockwise)

Preceding gene: 113474128

Following gene: 113474130

Centisome position: 4.61

GC content: 39.95

Gene sequence:

>876_bases
ATGAAATATAAACAAGTTATTATTTGTGCTTTGGGATTATTGGTAGGAATGACTCAACTAGTTTGGGGGGAATTTCAAAA
CCCACAAACAAGTAGACCAGGGAACAAACGAGATCGGGGGAATCACATGACAGAAAGTAGACCAGAGCAGAGGAAAAAGA
AGCCACCAGTTAATATGCCAATAAAGCATAAACCGTTTGAAAGCCCACCAATAAGTAGACCAGGGAACAGAGGAGATGCG
GGGCATCAGGCGATAGAACCTCATGGAGATGGACGGACTAGAGGTCCTAATAATCCTGCTGAATTATGTCTTCAAATGGA
AAAGCCTCTTTTGGCTCTCATTCCTCAAAGCAACTTCGGATACACTTTAGCAAGTCATCCGACTTTTTGGTTATATCTTC
CTGGCTATAACAACTCTATTAATTTCACTTTGAAGGATGAAGATACTGGAAAGGAAATTTATCAAACTAAGTTTAATGTT
GAATCTGAACGGGGAATTATTAGTTTGAAGTTACCTTCTGCTGCACCGCGTTTACAGGTAGGAAAAGAATATCGTTGGCA
ATTTGTTTTTAACTGTAGAAATGAGTCCAAGAATTTATCTGTTGAAGCAGTGGTTGCGCGGAAGGCAACTACCGAGAGTT
TGACTAGTCAGTTGAGCTCGGCTACAACTGTGATGGAAATGATAGATATTTATGGGAAAAATGGTTTGTGGCATGAGACT
ATTACGACATTAGGAAACTTGCGCCGGAGTTATCCTAATAATGTAGCGATCGCCACTAGATGGAATAGTTTATTGGAGCA
AGATGGTATCCGTTTTCCAGACTATGATTTGACTAAGACCGAGATTCAAAATTGTTGTAATGTTTCCGATCAGTAG

Upstream 100 bases:

>100_bases
GAAGACATTTTATTTATCCAGGCCATTTTGGTAAATTAAATTCTTCCATCTATTGAACAAATTGGTATTACAAAAAGTTT
TTTTTGAGGGATAAAATTCT

Downstream 100 bases:

>100_bases
TACTAACAGGACTTACGCAGAATTATTATATCTAGTAGGGTTTAATGACTATTAACCTCTACAGGCAGTGTATTATCTAC
AAGTTGGTATAAGTCTTATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MKYKQVIICALGLLVGMTQLVWGEFQNPQTSRPGNKRDRGNHMTESRPEQRKKKPPVNMPIKHKPFESPPISRPGNRGDA
GHQAIEPHGDGRTRGPNNPAELCLQMEKPLLALIPQSNFGYTLASHPTFWLYLPGYNNSINFTLKDEDTGKEIYQTKFNV
ESERGIISLKLPSAAPRLQVGKEYRWQFVFNCRNESKNLSVEAVVARKATTESLTSQLSSATTVMEMIDIYGKNGLWHET
ITTLGNLRRSYPNNVAIATRWNSLLEQDGIRFPDYDLTKTEIQNCCNVSDQ

Sequences:

>Translated_291_residues
MKYKQVIICALGLLVGMTQLVWGEFQNPQTSRPGNKRDRGNHMTESRPEQRKKKPPVNMPIKHKPFESPPISRPGNRGDA
GHQAIEPHGDGRTRGPNNPAELCLQMEKPLLALIPQSNFGYTLASHPTFWLYLPGYNNSINFTLKDEDTGKEIYQTKFNV
ESERGIISLKLPSAAPRLQVGKEYRWQFVFNCRNESKNLSVEAVVARKATTESLTSQLSSATTVMEMIDIYGKNGLWHET
ITTLGNLRRSYPNNVAIATRWNSLLEQDGIRFPDYDLTKTEIQNCCNVSDQ
>Mature_291_residues
MKYKQVIICALGLLVGMTQLVWGEFQNPQTSRPGNKRDRGNHMTESRPEQRKKKPPVNMPIKHKPFESPPISRPGNRGDA
GHQAIEPHGDGRTRGPNNPAELCLQMEKPLLALIPQSNFGYTLASHPTFWLYLPGYNNSINFTLKDEDTGKEIYQTKFNV
ESERGIISLKLPSAAPRLQVGKEYRWQFVFNCRNESKNLSVEAVVARKATTESLTSQLSSATTVMEMIDIYGKNGLWHET
ITTLGNLRRSYPNNVAIATRWNSLLEQDGIRFPDYDLTKTEIQNCCNVSDQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32935; Mature: 32935

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYKQVIICALGLLVGMTQLVWGEFQNPQTSRPGNKRDRGNHMTESRPEQRKKKPPVNMP
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC
IKHKPFESPPISRPGNRGDAGHQAIEPHGDGRTRGPNNPAELCLQMEKPLLALIPQSNFG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCC
YTLASHPTFWLYLPGYNNSINFTLKDEDTGKEIYQTKFNVESERGIISLKLPSAAPRLQV
EEEECCCEEEEEECCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCCCCC
GKEYRWQFVFNCRNESKNLSVEAVVARKATTESLTSQLSSATTVMEMIDIYGKNGLWHET
CCCEEEEEEEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
ITTLGNLRRSYPNNVAIATRWNSLLEQDGIRFPDYDLTKTEIQNCCNVSDQ
HHHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCC
>Mature Secondary Structure
MKYKQVIICALGLLVGMTQLVWGEFQNPQTSRPGNKRDRGNHMTESRPEQRKKKPPVNMP
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC
IKHKPFESPPISRPGNRGDAGHQAIEPHGDGRTRGPNNPAELCLQMEKPLLALIPQSNFG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCC
YTLASHPTFWLYLPGYNNSINFTLKDEDTGKEIYQTKFNVESERGIISLKLPSAAPRLQV
EEEECCCEEEEEECCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCCCCC
GKEYRWQFVFNCRNESKNLSVEAVVARKATTESLTSQLSSATTVMEMIDIYGKNGLWHET
CCCEEEEEEEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
ITTLGNLRRSYPNNVAIATRWNSLLEQDGIRFPDYDLTKTEIQNCCNVSDQ
HHHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA