| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474114
Identifier: 113474114
GI number: 113474114
Start: 324132
End: 325088
Strand: Direct
Name: 113474114
Synonym: Tery_0213
Alternate gene names: NA
Gene position: 324132-325088 (Clockwise)
Preceding gene: 113474113
Following gene: 113474115
Centisome position: 4.18
GC content: 36.26
Gene sequence:
>957_bases ATGACATCAAAAAATCTACGGGAACTTGCTAAACAAGGAGATCCAAAAGTTATCTCCTCAATTATTAATCATTCACTACA AAAAAAGGGTATTAATGTCCAAGTAACTAAGGAGAATGATTCTCTTGAAATTAAACTGGAGTCGGATCAAGTTTTTAATC AACAAGCCTCTCTTGTTGAATTTATCCAAACTGGAATTAAGAAATTGGGAGTTGAATCAATTAATACAGTTAAGGTATAT GGTGTTCCAACTGGTAATGAAATACCAGTCTGGGAAGATGAGTTTTTTTTGGATACATCACTAAAGACTAATACACCTGA ACTTGAACAAGAATTGGAAGTAAGGGATTTTCCAAAAACTGCTGTAGATAAGTTGGATCAAGAATTGGAAGCAGCATACG AAACAGAAACAGATGAAGACTACGAGGAAGGAGAATACGACGAAGAAGTTGAAGATGATGATTATGATGAGGAATTATCA GAAGACCCTAACTCTCAAAAAAAGAAGATCCCTTTAATAGCAACAATACTACTGTCTATTCTGCTGGTGCTAGTCGCTGT CGGTGCTGCATTGCACTTTAGTGGGATATTTTCACTCCCATTCCTCAATAATTCAAAGCAGCCAGACGCTAATTCTAATA ATGTTAACTCATCTACACCAAACACTTCTCCTGATGATTCTCCGGATTCAACATCTGCAACAACAGACTCTACAACTAGT GTTTCAAATCCTTGGTATTTTGCTGTTAAGAGCGCCCAAAGTGCTGCTAAAAAAGCTCAGACTGCTCAAACTAAATCTGA ATGGAATGCAGTAGCTAGTGACTGGCAAAAAGCTGTCGAGCTAATGAAAAAAGTACCGGAGTCCAACTCAAATTATCAAA GAGCACAAAAAAAAGTTGTTGAGTATCAAAATAATTTAGATATAGCAAAGCAAAGGGCAGATAAAGCTTTTAATTAG
Upstream 100 bases:
>100_bases AACTATGAAAATTTTCAACCTTGGCGGTAAGAATATCAAAATTGATTATAGTAATTAAGTAAATTAACTATTCGCCCTCC ATTCCAAAGGAGCGCTAGTC
Downstream 100 bases:
>100_bases GAGCCAGTAAACAAAAACATGAAACTTTTTGTACCAGGTCGCCTTTGTTTATTTGGAGAACATAGTGATTGGGCAGGAGG GTATCGTTCTATGAACCCCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 318; Mature: 317
Protein sequence:
>318_residues MTSKNLRELAKQGDPKVISSIINHSLQKKGINVQVTKENDSLEIKLESDQVFNQQASLVEFIQTGIKKLGVESINTVKVY GVPTGNEIPVWEDEFFLDTSLKTNTPELEQELEVRDFPKTAVDKLDQELEAAYETETDEDYEEGEYDEEVEDDDYDEELS EDPNSQKKKIPLIATILLSILLVLVAVGAALHFSGIFSLPFLNNSKQPDANSNNVNSSTPNTSPDDSPDSTSATTDSTTS VSNPWYFAVKSAQSAAKKAQTAQTKSEWNAVASDWQKAVELMKKVPESNSNYQRAQKKVVEYQNNLDIAKQRADKAFN
Sequences:
>Translated_318_residues MTSKNLRELAKQGDPKVISSIINHSLQKKGINVQVTKENDSLEIKLESDQVFNQQASLVEFIQTGIKKLGVESINTVKVY GVPTGNEIPVWEDEFFLDTSLKTNTPELEQELEVRDFPKTAVDKLDQELEAAYETETDEDYEEGEYDEEVEDDDYDEELS EDPNSQKKKIPLIATILLSILLVLVAVGAALHFSGIFSLPFLNNSKQPDANSNNVNSSTPNTSPDDSPDSTSATTDSTTS VSNPWYFAVKSAQSAAKKAQTAQTKSEWNAVASDWQKAVELMKKVPESNSNYQRAQKKVVEYQNNLDIAKQRADKAFN >Mature_317_residues TSKNLRELAKQGDPKVISSIINHSLQKKGINVQVTKENDSLEIKLESDQVFNQQASLVEFIQTGIKKLGVESINTVKVYG VPTGNEIPVWEDEFFLDTSLKTNTPELEQELEVRDFPKTAVDKLDQELEAAYETETDEDYEEGEYDEEVEDDDYDEELSE DPNSQKKKIPLIATILLSILLVLVAVGAALHFSGIFSLPFLNNSKQPDANSNNVNSSTPNTSPDDSPDSTSATTDSTTSV SNPWYFAVKSAQSAAKKAQTAQTKSEWNAVASDWQKAVELMKKVPESNSNYQRAQKKVVEYQNNLDIAKQRADKAFN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35421; Mature: 35290
Theoretical pI: Translated: 4.23; Mature: 4.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 0.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 0.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSKNLRELAKQGDPKVISSIINHSLQKKGINVQVTKENDSLEIKLESDQVFNQQASLVE CCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCHHHHHHHHHHHH FIQTGIKKLGVESINTVKVYGVPTGNEIPVWEDEFFLDTSLKTNTPELEQELEVRDFPKT HHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCHH AVDKLDQELEAAYETETDEDYEEGEYDEEVEDDDYDEELSEDPNSQKKKIPLIATILLSI HHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCHHHHHCCCCCHHHCCHHHHHHHHHH LLVLVAVGAALHFSGIFSLPFLNNSKQPDANSNNVNSSTPNTSPDDSPDSTSATTDSTTS HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC VSNPWYFAVKSAQSAAKKAQTAQTKSEWNAVASDWQKAVELMKKVPESNSNYQRAQKKVV CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH EYQNNLDIAKQRADKAFN HHHCCHHHHHHHHHCCCC >Mature Secondary Structure TSKNLRELAKQGDPKVISSIINHSLQKKGINVQVTKENDSLEIKLESDQVFNQQASLVE CCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCHHHHHHHHHHHH FIQTGIKKLGVESINTVKVYGVPTGNEIPVWEDEFFLDTSLKTNTPELEQELEVRDFPKT HHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCHH AVDKLDQELEAAYETETDEDYEEGEYDEEVEDDDYDEELSEDPNSQKKKIPLIATILLSI HHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCHHHHHCCCCCHHHCCHHHHHHHHHH LLVLVAVGAALHFSGIFSLPFLNNSKQPDANSNNVNSSTPNTSPDDSPDSTSATTDSTTS HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC VSNPWYFAVKSAQSAAKKAQTAQTKSEWNAVASDWQKAVELMKKVPESNSNYQRAQKKVV CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH EYQNNLDIAKQRADKAFN HHHCCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA