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The map label for this gene is sufS [C]

Identifier: 113474102

GI number: 113474102

Start: 304605

End: 306062

Strand: Direct

Name: sufS [C]

Synonym: Tery_0201

Alternate gene names: 113474102

Gene position: 304605-306062 (Clockwise)

Preceding gene: 113474101

Following gene: 113474103

Centisome position: 3.93

GC content: 36.76

Gene sequence:

>1458_bases
ATGGATGAAAATTATCTATCTTGGGAAAATAAAGTCAAATCTTTCTTTGACTGTGATGCACTAAATTTTCAGATTACAAA
TCGTTTCGGAGAGCAGATTAAATACATTAACTTAGATAATGCTGCCACAACAACACCTTTAGCAGGAGTGAAACAATATG
TTGACCATATGTTAAATGCTTATGGCAGTGTACACCGGGGAGCTGGCCAAAAATCCCAGATTTCAACTCAGAAGTACGAT
CAGAGTCGGGATATTATTCGTAAATTTGTAGGGGCTTCTCCAGAGAATTACGTAATTTTTGCTCAAAATACTACAGGAGC
AATTAATCAAGCAGCATCACTTTGGGCAAAACGACCAGGAAAAATTCTAGTCTCTGATATTGAACATTCTTCAAATCTAT
TGCCTTGGCTGACATGCAATAATGTAACTCAATACCGCACTGCTCCAGATGGAACTATTAACCTGGCAGAAATTGAGAAA
ATTCTCAAGGAAAACAAAGAAAAACCTGCGGAAAAAAGAATTAAATTAGTTACAATTACAGGAGCTTCTACTATTACAGG
ATATAAACCACCGATTTATGAAATTGCCAAGTTAGCCCACAATTACGGAGCGAAAATTTTCGCTGATCTGTGTCAGCTTA
TTCAGCATGAGTGTGTTGAAATGCTTCCCGATGCTGACCCATGTCATTTGGACTTTGTAGCCTTCTCTGGACACAAAATG
TATGCACCTTATGGTACAGGGGTTTTAATTGGGCCAAAAGAGTTTTTTGATCGTGATTTTCCTTATCAAATAGGTGGTGG
AAATTTACCCTATATTACTAAAAAACTAGAAATTAAGAGATTTTATACTGAGCGGGCGCATGACCCTGGAACTCCAAATG
CTATGGGAGCAATTGCTATTGCACAAGCTATTGAAGTTCTTGAGAAGATAGGAAGAGAAAAAATTGCTGAGTATGAACAT
TTTCTGGTGGATTATACATTTCAAAAACTACAAAATATTCCAGGTGTTATACTTTATATATCGGGAAGTTCCCTAGCTCA
TGTAATTCCTTTCGACTTGGAAGGTTTTGATGGATACTTAGTTGCAGAAATTCTAGCTCAAGAATATGGCATTGGTCTAC
GTTCAGGGGCTTTCTGCACATACGAATATATCCGAAAATTAAAAAATATTTCCGACCAAAAAGATCAAGAAATAGCTCAA
GAAGTTGAAAGGGGAATTACATGCAATATTCCTACTATCATCCGCGCTAGCTTTGCAGTCTATAATACTCTGGCAGACTG
CAATAGCTTTGTTGAAGCTATTTCTCAAATTACTGCCAATGGATTTAAGCACTATCTGTCTGACTACGAAAAAAATGAGA
TAACAGGTGTTTGGAAACTCAAAGAAAATACTCCTATCTCAATTGCTAGAAAACAGATAAATAGAGGCCAAACACTTTTA
GGAACATGCATAGAGTAA

Upstream 100 bases:

>100_bases
GCCAAACAATCCTGATTGTATTAGGGTTTTTTGATTCTTACTTATTTACTTAAACCTATGCTATCATATAGGATTTTATT
AACTGCAGGGAGCCAACATT

Downstream 100 bases:

>100_bases
ATTAAAATACATTGTGAGTTATGGGAAAGTTTGATAAGCTAAAAACAACTTTAACCAAATTTATATAAATAATTTGTGCT
ACTTAGCTCTTGAACTTTTT

Product: class V aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 485; Mature: 485

Protein sequence:

>485_residues
MDENYLSWENKVKSFFDCDALNFQITNRFGEQIKYINLDNAATTTPLAGVKQYVDHMLNAYGSVHRGAGQKSQISTQKYD
QSRDIIRKFVGASPENYVIFAQNTTGAINQAASLWAKRPGKILVSDIEHSSNLLPWLTCNNVTQYRTAPDGTINLAEIEK
ILKENKEKPAEKRIKLVTITGASTITGYKPPIYEIAKLAHNYGAKIFADLCQLIQHECVEMLPDADPCHLDFVAFSGHKM
YAPYGTGVLIGPKEFFDRDFPYQIGGGNLPYITKKLEIKRFYTERAHDPGTPNAMGAIAIAQAIEVLEKIGREKIAEYEH
FLVDYTFQKLQNIPGVILYISGSSLAHVIPFDLEGFDGYLVAEILAQEYGIGLRSGAFCTYEYIRKLKNISDQKDQEIAQ
EVERGITCNIPTIIRASFAVYNTLADCNSFVEAISQITANGFKHYLSDYEKNEITGVWKLKENTPISIARKQINRGQTLL
GTCIE

Sequences:

>Translated_485_residues
MDENYLSWENKVKSFFDCDALNFQITNRFGEQIKYINLDNAATTTPLAGVKQYVDHMLNAYGSVHRGAGQKSQISTQKYD
QSRDIIRKFVGASPENYVIFAQNTTGAINQAASLWAKRPGKILVSDIEHSSNLLPWLTCNNVTQYRTAPDGTINLAEIEK
ILKENKEKPAEKRIKLVTITGASTITGYKPPIYEIAKLAHNYGAKIFADLCQLIQHECVEMLPDADPCHLDFVAFSGHKM
YAPYGTGVLIGPKEFFDRDFPYQIGGGNLPYITKKLEIKRFYTERAHDPGTPNAMGAIAIAQAIEVLEKIGREKIAEYEH
FLVDYTFQKLQNIPGVILYISGSSLAHVIPFDLEGFDGYLVAEILAQEYGIGLRSGAFCTYEYIRKLKNISDQKDQEIAQ
EVERGITCNIPTIIRASFAVYNTLADCNSFVEAISQITANGFKHYLSDYEKNEITGVWKLKENTPISIARKQINRGQTLL
GTCIE
>Mature_485_residues
MDENYLSWENKVKSFFDCDALNFQITNRFGEQIKYINLDNAATTTPLAGVKQYVDHMLNAYGSVHRGAGQKSQISTQKYD
QSRDIIRKFVGASPENYVIFAQNTTGAINQAASLWAKRPGKILVSDIEHSSNLLPWLTCNNVTQYRTAPDGTINLAEIEK
ILKENKEKPAEKRIKLVTITGASTITGYKPPIYEIAKLAHNYGAKIFADLCQLIQHECVEMLPDADPCHLDFVAFSGHKM
YAPYGTGVLIGPKEFFDRDFPYQIGGGNLPYITKKLEIKRFYTERAHDPGTPNAMGAIAIAQAIEVLEKIGREKIAEYEH
FLVDYTFQKLQNIPGVILYISGSSLAHVIPFDLEGFDGYLVAEILAQEYGIGLRSGAFCTYEYIRKLKNISDQKDQEIAQ
EVERGITCNIPTIIRASFAVYNTLADCNSFVEAISQITANGFKHYLSDYEKNEITGVWKLKENTPISIARKQINRGQTLL
GTCIE

Specific function: Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine [H]

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787970, Length=437, Percent_Identity=29.5194508009153, Blast_Score=172, Evalue=3e-44,
Organism=Escherichia coli, GI1789175, Length=411, Percent_Identity=28.2238442822384, Blast_Score=137, Evalue=1e-33,
Organism=Caenorhabditis elegans, GI193211090, Length=468, Percent_Identity=26.0683760683761, Blast_Score=121, Evalue=9e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR010970
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =2.8.1.7 [H]

Molecular weight: Translated: 54407; Mature: 54407

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: PS00595 AA_TRANSFER_CLASS_5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDENYLSWENKVKSFFDCDALNFQITNRFGEQIKYINLDNAATTTPLAGVKQYVDHMLNA
CCCCCCCHHHHHHHHHCCCCCCEEEHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
YGSVHRGAGQKSQISTQKYDQSRDIIRKFVGASPENYVIFAQNTTGAINQAASLWAKRPG
HHHHHCCCCCCHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHCCCC
KILVSDIEHSSNLLPWLTCNNVTQYRTAPDGTINLAEIEKILKENKEKPAEKRIKLVTIT
CEEEEECCCCCCCCCEEEECCCEEECCCCCCCEEHHHHHHHHHHCCCCCHHHCEEEEEEE
GASTITGYKPPIYEIAKLAHNYGAKIFADLCQLIQHECVEMLPDADPCHLDFVAFSGHKM
CCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCEE
YAPYGTGVLIGPKEFFDRDFPYQIGGGNLPYITKKLEIKRFYTERAHDPGTPNAMGAIAI
ECCCCCEEEECCHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHH
AQAIEVLEKIGREKIAEYEHFLVDYTFQKLQNIPGVILYISGSSLAHVIPFDLEGFDGYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEECCCCCCCCHHH
VAEILAQEYGIGLRSGAFCTYEYIRKLKNISDQKDQEIAQEVERGITCNIPTIIRASFAV
HHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHH
YNTLADCNSFVEAISQITANGFKHYLSDYEKNEITGVWKLKENTPISIARKQINRGQTLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCHH
GTCIE
HHCCC
>Mature Secondary Structure
MDENYLSWENKVKSFFDCDALNFQITNRFGEQIKYINLDNAATTTPLAGVKQYVDHMLNA
CCCCCCCHHHHHHHHHCCCCCCEEEHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
YGSVHRGAGQKSQISTQKYDQSRDIIRKFVGASPENYVIFAQNTTGAINQAASLWAKRPG
HHHHHCCCCCCHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHCCCC
KILVSDIEHSSNLLPWLTCNNVTQYRTAPDGTINLAEIEKILKENKEKPAEKRIKLVTIT
CEEEEECCCCCCCCCEEEECCCEEECCCCCCCEEHHHHHHHHHHCCCCCHHHCEEEEEEE
GASTITGYKPPIYEIAKLAHNYGAKIFADLCQLIQHECVEMLPDADPCHLDFVAFSGHKM
CCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCEE
YAPYGTGVLIGPKEFFDRDFPYQIGGGNLPYITKKLEIKRFYTERAHDPGTPNAMGAIAI
ECCCCCEEEECCHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHH
AQAIEVLEKIGREKIAEYEHFLVDYTFQKLQNIPGVILYISGSSLAHVIPFDLEGFDGYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEECCCCCCCCHHH
VAEILAQEYGIGLRSGAFCTYEYIRKLKNISDQKDQEIAQEVERGITCNIPTIIRASFAV
HHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHH
YNTLADCNSFVEAISQITANGFKHYLSDYEKNEITGVWKLKENTPISIARKQINRGQTLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCHH
GTCIE
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA