| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110835409
Identifier: 110835409
GI number: 110835409
Start: 2889737
End: 2890297
Strand: Reverse
Name: 110835409
Synonym: ABO_2548
Alternate gene names: NA
Gene position: 2890297-2889737 (Counterclockwise)
Preceding gene: 110835410
Following gene: 110835408
Centisome position: 92.63
GC content: 54.9
Gene sequence:
>561_bases ATGAGAACCATTATCATAAATAATGGTTTTTCTTATGTTGGTTGCCGTTCTCGCCACATTTGCCAGTGTGGCGCTGTTTT ATCTGTCCGACCGACAGCAGCGCTGGCTGGATCAACCTCTCCCTGCCTTTACTCGCTTGATCGCTTTGGCCATGTTGGCC GGCGGGCTGCTGCTGTTCACCCTGCAATTGGGGGTCAGCGTGGGCCTGTTTGTAGGGTTGTGGGTATCCACATTACCGGC GCTGCTGGTGCCCTTGATAGTGAGTCATTATCGAGACCGTTATCAGCGCCGGGGTGGAAGCCGATGAGAGCTTTTTGGGC ATTTGTATTCAGTTTGCCGCTGTCAGCAATGCTGATGGGGTTGCTGGCGGCATTGGTGCCGGTTCCTTGGCAATCTTGGT TGGTGTTGCAGTTGTTGGGGATAATGTTGTTGTGGATGTTGCTGGTGGTTTTGGTGGCAATCCCTGAGCGTACCTGGCCG CCTTTGGTGGCGCTGTTGGTGATGAACGGGGTTGCCTGGCTAGCGTTGCAGGCAACGGCCCTGTATGGAGGCGGCGCATG A
Upstream 100 bases:
>100_bases ACCGCGCGGCTCAGTGAGGCCAGTGACTATCTGCGTAAGTTGCGGCCTCGTTGAGCTCGTCGGCCTTGTTATCTTGACGG AAGCGACCGCCTGCTATTAA
Downstream 100 bases:
>100_bases AAGCGGCTCGTTTGCGGCGTTTTATCGATTTACATGCTTGGCTGGGCATGGTCAGTGGGCTGATTCTGTTTGTGGCGTTT TTTGCTGGCGCTATCAATGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 186; Mature: 186
Protein sequence:
>186_residues MRTIIINNGFSYVGCRSRHICQCGAVLSVRPTAALAGSTSPCLYSLDRFGHVGRRAAAVHPAIGGQRGPVCRVVGIHITG AAGALDSESLSRPLSAPGWKPMRAFWAFVFSLPLSAMLMGLLAALVPVPWQSWLVLQLLGIMLLWMLLVVLVAIPERTWP PLVALLVMNGVAWLALQATALYGGGA
Sequences:
>Translated_186_residues MRTIIINNGFSYVGCRSRHICQCGAVLSVRPTAALAGSTSPCLYSLDRFGHVGRRAAAVHPAIGGQRGPVCRVVGIHITG AAGALDSESLSRPLSAPGWKPMRAFWAFVFSLPLSAMLMGLLAALVPVPWQSWLVLQLLGIMLLWMLLVVLVAIPERTWP PLVALLVMNGVAWLALQATALYGGGA >Mature_186_residues MRTIIINNGFSYVGCRSRHICQCGAVLSVRPTAALAGSTSPCLYSLDRFGHVGRRAAAVHPAIGGQRGPVCRVVGIHITG AAGALDSESLSRPLSAPGWKPMRAFWAFVFSLPLSAMLMGLLAALVPVPWQSWLVLQLLGIMLLWMLLVVLVAIPERTWP PLVALLVMNGVAWLALQATALYGGGA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19766; Mature: 19766
Theoretical pI: Translated: 10.71; Mature: 10.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 6.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTIIINNGFSYVGCRSRHICQCGAVLSVRPTAALAGSTSPCLYSLDRFGHVGRRAAAVH CEEEEEECCCCEECCCCCCHHHHCCEEEECCCHHHCCCCCHHHHHHHHHHHHCCHHHHCC PAIGGQRGPVCRVVGIHITGAAGALDSESLSRPLSAPGWKPMRAFWAFVFSLPLSAMLMG CCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH LLAALVPVPWQSWLVLQLLGIMLLWMLLVVLVAIPERTWPPLVALLVMNGVAWLALQATA HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH LYGGGA HCCCCC >Mature Secondary Structure MRTIIINNGFSYVGCRSRHICQCGAVLSVRPTAALAGSTSPCLYSLDRFGHVGRRAAAVH CEEEEEECCCCEECCCCCCHHHHCCEEEECCCHHHCCCCCHHHHHHHHHHHHCCHHHHCC PAIGGQRGPVCRVVGIHITGAAGALDSESLSRPLSAPGWKPMRAFWAFVFSLPLSAMLMG CCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH LLAALVPVPWQSWLVLQLLGIMLLWMLLVVLVAIPERTWPPLVALLVMNGVAWLALQATA HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH LYGGGA HCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA