| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
Click here to switch to the map view.
The map label for this gene is 110835317
Identifier: 110835317
GI number: 110835317
Start: 2781449
End: 2782084
Strand: Reverse
Name: 110835317
Synonym: ABO_2456
Alternate gene names: NA
Gene position: 2782084-2781449 (Counterclockwise)
Preceding gene: 110835318
Following gene: 110835312
Centisome position: 89.17
GC content: 54.87
Gene sequence:
>636_bases ATGAGCGCTAACAACCGTATCTGGTTTTTTATTCGTAAGTCGCTGCTGGGTGGGCTCACCATCCTGTTGCCGATTTCCAT TATCGTGTTCTTCTTCAAATGGATTTATCAGACCGTGACCGAGCTGATTTCTCCTTTTACCTCAGTGTTTATCAGTGCTT TCGGGTTGCCAAAGTTTGTCGCAGATTGGCTATCGGTGCTGGCGGTCATGGTGCTGTGTTTTCTAGTTGGCACTCTGGTG GCAACCCGAGTGGGAAGCTGGGCCTGGCAGCAGTGGGAAGAACATGTGATGACTCGCTTACCCGGATACACCACTGTCCG TGAAGTGATTGCCCAGTTGATGGGGAGTAGCGCAGATAGCCCATTCAGCCGGGGCGAGGTGGCGCGGGTGTGGCTCTATG GGAGAGATACGGACGTGTCTGTTACTGCGCTGGTCACGTCCCGGCACGCGGATGGTCACGTCACTGTGTTCGTCCCCACT GGGCCCAACCCCACCAGCGGATTCATTTACCACCTAGATGCATCACTGGTGGAGCTGCATCCAGAAATCGGTGTGGAAAG CATGATGAAAACGGTGGTCTCTTGCGGGGCGGGTACCGCGCACTTGTTCAAGACGGATACCCCCAAAGCGCCCTAG
Upstream 100 bases:
>100_bases ACGAAGAGCCTGCACGTCGGGATTGAGCCTAGGCTTGTACAGGCGCGTATGAGCTGGTGGGCAGGCTCGCTTGCCGAAAT AATAGAGGAATTCTCCGCCG
Downstream 100 bases:
>100_bases CATTTTCATCGAAGCCGCTAGGACGCCGAGTCTGGTTTGCCACGCGAAAGCCACGTGCTCCTATAAAACAAGTGGTGTTT GCGGGCTTCCGGTGCTTAGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 211; Mature: 210
Protein sequence:
>211_residues MSANNRIWFFIRKSLLGGLTILLPISIIVFFFKWIYQTVTELISPFTSVFISAFGLPKFVADWLSVLAVMVLCFLVGTLV ATRVGSWAWQQWEEHVMTRLPGYTTVREVIAQLMGSSADSPFSRGEVARVWLYGRDTDVSVTALVTSRHADGHVTVFVPT GPNPTSGFIYHLDASLVELHPEIGVESMMKTVVSCGAGTAHLFKTDTPKAP
Sequences:
>Translated_211_residues MSANNRIWFFIRKSLLGGLTILLPISIIVFFFKWIYQTVTELISPFTSVFISAFGLPKFVADWLSVLAVMVLCFLVGTLV ATRVGSWAWQQWEEHVMTRLPGYTTVREVIAQLMGSSADSPFSRGEVARVWLYGRDTDVSVTALVTSRHADGHVTVFVPT GPNPTSGFIYHLDASLVELHPEIGVESMMKTVVSCGAGTAHLFKTDTPKAP >Mature_210_residues SANNRIWFFIRKSLLGGLTILLPISIIVFFFKWIYQTVTELISPFTSVFISAFGLPKFVADWLSVLAVMVLCFLVGTLVA TRVGSWAWQQWEEHVMTRLPGYTTVREVIAQLMGSSADSPFSRGEVARVWLYGRDTDVSVTALVTSRHADGHVTVFVPTG PNPTSGFIYHLDASLVELHPEIGVESMMKTVVSCGAGTAHLFKTDTPKAP
Specific function: Unknown
COG id: COG2928
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23297; Mature: 23166
Theoretical pI: Translated: 7.67; Mature: 7.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSANNRIWFFIRKSLLGGLTILLPISIIVFFFKWIYQTVTELISPFTSVFISAFGLPKFV CCCCCEEEHEEHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH ADWLSVLAVMVLCFLVGTLVATRVGSWAWQQWEEHVMTRLPGYTTVREVIAQLMGSSADS HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC PFSRGEVARVWLYGRDTDVSVTALVTSRHADGHVTVFVPTGPNPTSGFIYHLDASLVELH CCCCCCEEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECHHHHHHC PEIGVESMMKTVVSCGAGTAHLFKTDTPKAP CCCCHHHHHHHHHHCCCCCCEEEECCCCCCC >Mature Secondary Structure SANNRIWFFIRKSLLGGLTILLPISIIVFFFKWIYQTVTELISPFTSVFISAFGLPKFV CCCCEEEHEEHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH ADWLSVLAVMVLCFLVGTLVATRVGSWAWQQWEEHVMTRLPGYTTVREVIAQLMGSSADS HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC PFSRGEVARVWLYGRDTDVSVTALVTSRHADGHVTVFVPTGPNPTSGFIYHLDASLVELH CCCCCCEEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECHHHHHHC PEIGVESMMKTVVSCGAGTAHLFKTDTPKAP CCCCHHHHHHHHHHCCCCCCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA