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The map label for this gene is 110835248

Identifier: 110835248

GI number: 110835248

Start: 2711081

End: 2711614

Strand: Direct

Name: 110835248

Synonym: ABO_2387

Alternate gene names: NA

Gene position: 2711081-2711614 (Clockwise)

Preceding gene: 110835247

Following gene: 110835249

Centisome position: 86.89

GC content: 57.49

Gene sequence:

>534_bases
ATGGATTCAGTGGTAATGAAGTGGCTGCTCACCGTGATGGTGCTGCTGGTCGGCTGGGTATTGTCCATCGCCCTGCGTGG
GGCAACCAAACGGCTGGGCCGCCGCCGGGGCTATAGTCGCGCGCGTATTTTTCAAACCGCCGTGGTGATCAACAGCAGCA
GCTTGCTCCTTTGCCTGTTGGCGCTAAGCATTTTGTGGGGCTTAAAAGGCGACGGCATCATGGTTTTCGCCACCTCACTG
ATGGCACTGCTCGGCGTGGCGCTGTTTGCTAGCTGGTCCATGCTGAGCAACACTACCGCCGCCATCATTCTGTTCTTCAG
TGCGCCTTACCGGGTCGGCGACCGAATCCGCTTACTGGACGGCGACAACACTGTCACCGGCCAGGTCCGCCACATGGGGC
TGATCTTCATTACCATTCAAGATGAACTGGGCCATCGCTACACCCTGCCCAACAACCTGCTGCTGCAGAAAACCGTCATC
CAGCTACGCGGCGACACTCTGCCCCGGGATCAAAAACATATCAAAGCAGACTAA

Upstream 100 bases:

>100_bases
TGGACGACGACGTGTCCTTTATTCCCGGCCACGGCCCCATGTCCACCATTGGCCATGAACGCAGCCACAACCCTTTCGTA
TCTGGCAAACACGGATAAAC

Downstream 100 bases:

>100_bases
CCCCCCGTTCTCGCCACATTCAGAGTCCGGTAAAGTAATAACAGCGAAGAAGCATCGGCCCAACGAATAGAGCACGCGGT
CAAAAAAATGGCCATGCTCG

Product: hypothetical protein

Products: NA

Alternate protein names: Small-Conductance Mechanosensitive Ion Channel Protein; Mscs Mechanosensitive Ion Channel; MscS Mechanosensitive Ion Channel

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MDSVVMKWLLTVMVLLVGWVLSIALRGATKRLGRRRGYSRARIFQTAVVINSSSLLLCLLALSILWGLKGDGIMVFATSL
MALLGVALFASWSMLSNTTAAIILFFSAPYRVGDRIRLLDGDNTVTGQVRHMGLIFITIQDELGHRYTLPNNLLLQKTVI
QLRGDTLPRDQKHIKAD

Sequences:

>Translated_177_residues
MDSVVMKWLLTVMVLLVGWVLSIALRGATKRLGRRRGYSRARIFQTAVVINSSSLLLCLLALSILWGLKGDGIMVFATSL
MALLGVALFASWSMLSNTTAAIILFFSAPYRVGDRIRLLDGDNTVTGQVRHMGLIFITIQDELGHRYTLPNNLLLQKTVI
QLRGDTLPRDQKHIKAD
>Mature_177_residues
MDSVVMKWLLTVMVLLVGWVLSIALRGATKRLGRRRGYSRARIFQTAVVINSSSLLLCLLALSILWGLKGDGIMVFATSL
MALLGVALFASWSMLSNTTAAIILFFSAPYRVGDRIRLLDGDNTVTGQVRHMGLIFITIQDELGHRYTLPNNLLLQKTVI
QLRGDTLPRDQKHIKAD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19668; Mature: 19668

Theoretical pI: Translated: 11.26; Mature: 11.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSVVMKWLLTVMVLLVGWVLSIALRGATKRLGRRRGYSRARIFQTAVVINSSSLLLCLL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHEECCCHHHHHHH
ALSILWGLKGDGIMVFATSLMALLGVALFASWSMLSNTTAAIILFFSAPYRVGDRIRLLD
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEEE
GDNTVTGQVRHMGLIFITIQDELGHRYTLPNNLLLQKTVIQLRGDTLPRDQKHIKAD
CCCCEEEEEEEEEEEEEEEECCCCCEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDSVVMKWLLTVMVLLVGWVLSIALRGATKRLGRRRGYSRARIFQTAVVINSSSLLLCLL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHEECCCHHHHHHH
ALSILWGLKGDGIMVFATSLMALLGVALFASWSMLSNTTAAIILFFSAPYRVGDRIRLLD
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEEE
GDNTVTGQVRHMGLIFITIQDELGHRYTLPNNLLLQKTVIQLRGDTLPRDQKHIKAD
CCCCEEEEEEEEEEEEEEEECCCCCEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA