| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is hemX [H]
Identifier: 110835181
GI number: 110835181
Start: 2647682
End: 2648647
Strand: Reverse
Name: hemX [H]
Synonym: ABO_2320
Alternate gene names: 110835181
Gene position: 2648647-2647682 (Counterclockwise)
Preceding gene: 110835182
Following gene: 110835180
Centisome position: 84.89
GC content: 59.42
Gene sequence:
>966_bases ATGACGCAGGATCGTCCTTTTTTCCGCCAAACCGGGGTAAGCCTTCTGGCTGTGCTGCTTGTATTGGTGGTGCTGGTTGC ACTTGGCGCTGCTGGCTGGTGGGGGTGGCAGGAGTTTACCCGGCTGAAGAACGAAAAGAGCGGCCTTGCTGATCAGGTGG CGACAGTGAAAAGTGAGCTGACCAGTCAGCATCGCCAAGTACAGGCCGCATTATCTGACTTAGAAAAACGGCAGGCCAAG CTAGCTGCGCAGATGACCAACGACCGCGCAGCCTTGACCGATATAAAAAGCGGTGGGCAGCGACTGTGGTTGATCAATGA GGCCCGGGCACTGGCGAGTCTGGCCAGCCAGAGACTGTTGCTTACCCAAGATACGTTGGCAGCACGCCGTTTGTTAAAGG CCGCAGATGAGGTCTTGGCTCGCCTAGGTGATCCAGCCGTGTTGCCGGCCCGCAAAGCACTGGCCATGGATATGGAAATT CTCAGTGGCGCCAGCCAGGTGGATGTGCAGGGCATGGTGTTGCGTTTGGGCGCGTTGCGAGAGCTGGTAGTCGAACTGGC TGTACCGGCAGAAGCATTGCCATCGGAACGTGACCAGCCGGGAGTGGATCAGGGTTGGTGGCAGAGTGTGATCGACCGGA TGCCGATAACCGTGCGCCGCCATGACAGTGCGGTACCTCTGCCATTGTCGGGGGAGCAGGCCGCACTGGTGCGTCTGACT TTGGATGGCAGCCTGCAGCAGGCGCAGCTTGCACTGATGCAGGGGCGTGCTGACGCCTACCGTCAGGCGGTTGAAAGTGC CGAGTCGACACTCAAGCAATGGTTCCGTGGTGACGATCCCCGTGCCGCACAAATGCAGACCACCCTGAAGGAAATGAGCG GCGCCCAAGTGGCCCAAGCGTTGCCGCAGATCGGTAATGGCTTGGCGGCAATTGAAGCTCTCAAGCGCAAGGAGGGCGAG GCATGA
Upstream 100 bases:
>100_bases CAATGGGCGGTCACTTTAAGGTTTTTGCAATGAGATCGGGTATCGCCGCTGCGCAATTGAGTGTTGCGCTGGCCTCGCTT ACGACAACAACGGAGCTGAT
Downstream 100 bases:
>100_bases AGAAACTCGTCCTGCTGATTATTATTGCGTTGGTCGCCGCGTTGGCGCTGGGGCGTTGGATGGCAGCGGATTCCGGTTAT GTGCTGATTATCCGCGACAC
Product: uroporphyrin-III C-methyltransferase
Products: NA
Alternate protein names: Urogen-III methylase; ORF X [H]
Number of amino acids: Translated: 321; Mature: 320
Protein sequence:
>321_residues MTQDRPFFRQTGVSLLAVLLVLVVLVALGAAGWWGWQEFTRLKNEKSGLADQVATVKSELTSQHRQVQAALSDLEKRQAK LAAQMTNDRAALTDIKSGGQRLWLINEARALASLASQRLLLTQDTLAARRLLKAADEVLARLGDPAVLPARKALAMDMEI LSGASQVDVQGMVLRLGALRELVVELAVPAEALPSERDQPGVDQGWWQSVIDRMPITVRRHDSAVPLPLSGEQAALVRLT LDGSLQQAQLALMQGRADAYRQAVESAESTLKQWFRGDDPRAAQMQTTLKEMSGAQVAQALPQIGNGLAAIEALKRKEGE A
Sequences:
>Translated_321_residues MTQDRPFFRQTGVSLLAVLLVLVVLVALGAAGWWGWQEFTRLKNEKSGLADQVATVKSELTSQHRQVQAALSDLEKRQAK LAAQMTNDRAALTDIKSGGQRLWLINEARALASLASQRLLLTQDTLAARRLLKAADEVLARLGDPAVLPARKALAMDMEI LSGASQVDVQGMVLRLGALRELVVELAVPAEALPSERDQPGVDQGWWQSVIDRMPITVRRHDSAVPLPLSGEQAALVRLT LDGSLQQAQLALMQGRADAYRQAVESAESTLKQWFRGDDPRAAQMQTTLKEMSGAQVAQALPQIGNGLAAIEALKRKEGE A >Mature_320_residues TQDRPFFRQTGVSLLAVLLVLVVLVALGAAGWWGWQEFTRLKNEKSGLADQVATVKSELTSQHRQVQAALSDLEKRQAKL AAQMTNDRAALTDIKSGGQRLWLINEARALASLASQRLLLTQDTLAARRLLKAADEVLARLGDPAVLPARKALAMDMEIL SGASQVDVQGMVLRLGALRELVVELAVPAEALPSERDQPGVDQGWWQSVIDRMPITVRRHDSAVPLPLSGEQAALVRLTL DGSLQQAQLALMQGRADAYRQAVESAESTLKQWFRGDDPRAAQMQTTLKEMSGAQVAQALPQIGNGLAAIEALKRKEGEA
Specific function: Siroheme and cobalamin biosynthesis. [C]
COG id: COG2959
COG function: function code H; Uncharacterized enzyme of heme biosynthesis
Gene ontology:
Cell location: Cell inner membrane; Single-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1790235, Length=301, Percent_Identity=27.5747508305648, Blast_Score=99, Evalue=3e-22,
Paralogues:
None
Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007470 [H]
Pfam domain/function: PF04375 HemX [H]
EC number: =2.1.1.107 [H]
Molecular weight: Translated: 34875; Mature: 34743
Theoretical pI: Translated: 9.02; Mature: 9.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQDRPFFRQTGVSLLAVLLVLVVLVALGAAGWWGWQEFTRLKNEKSGLADQVATVKSEL CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH TSQHRQVQAALSDLEKRQAKLAAQMTNDRAALTDIKSGGQRLWLINEARALASLASQRLL HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHH LTQDTLAARRLLKAADEVLARLGDPAVLPARKALAMDMEILSGASQVDVQGMVLRLGALR HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH ELVVELAVPAEALPSERDQPGVDQGWWQSVIDRMPITVRRHDSAVPLPLSGEQAALVRLT HHHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEEEEE LDGSLQQAQLALMQGRADAYRQAVESAESTLKQWFRGDDPRAAQMQTTLKEMSGAQVAQA ECCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH LPQIGNGLAAIEALKRKEGEA HHHHCCHHHHHHHHHHHCCCC >Mature Secondary Structure TQDRPFFRQTGVSLLAVLLVLVVLVALGAAGWWGWQEFTRLKNEKSGLADQVATVKSEL CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH TSQHRQVQAALSDLEKRQAKLAAQMTNDRAALTDIKSGGQRLWLINEARALASLASQRLL HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHH LTQDTLAARRLLKAADEVLARLGDPAVLPARKALAMDMEILSGASQVDVQGMVLRLGALR HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH ELVVELAVPAEALPSERDQPGVDQGWWQSVIDRMPITVRRHDSAVPLPLSGEQAALVRLT HHHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEEEEE LDGSLQQAQLALMQGRADAYRQAVESAESTLKQWFRGDDPRAAQMQTTLKEMSGAQVAQA ECCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH LPQIGNGLAAIEALKRKEGEA HHHHCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 3062586; 3054815; 1379743; 9278503; 9298646 [H]