| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is lpxL1 [H]
Identifier: 110835153
GI number: 110835153
Start: 2613897
End: 2614811
Strand: Direct
Name: lpxL1 [H]
Synonym: ABO_2292
Alternate gene names: 110835153
Gene position: 2613897-2614811 (Clockwise)
Preceding gene: 110835152
Following gene: 110835165
Centisome position: 83.77
GC content: 54.32
Gene sequence:
>915_bases ATGGGAAAACGCATCAACCGACCTTCACGCCTCTCCGATCCGCGCCTATACCCTAGCTGGCTAGGCGTCGGGCTATTCTG GCTAGTCGGCCAGCTACCGTGGACTGTTTTATTGGCCGCGGGTCGTGGACTGGGCCACCTTGCCTGGCATCTGACAAAAA AACGCCGCCATGTTGTTCAGACCAACATTCGGTTTTGCTTCCCAGAATTAAGTGCCGAAGAGCAAGAAACCTTAGCCAGG CGCTGCATGGTCAGCACCGGCGAAGCCATTCTGGAAATGGCCGGAAGCTTCAGCAACCACCGCATCAACCTTAATAACCG CCTGACTATCAATGGCTTAGAGCATGTCCGCAATGCCCAAGCCGCAGGGCAAGGGGTGTTGTTACTGGGCATGCATTTCA ACAGCATAGATGTGGGGTCGCGGTTACTGAGTTGCGCATTTGATATGAATGCAGTCTATCGCCCCAACGATAACCTGGTG ATTGATCGCTTGATCAATAAGGGACGCCTGAACTACATGAAAGGCATCGTTAAGCGCACAGATATTCGACATATCGTTCG CTTGCTCAGAAAGGGAGACATAGTGTGGTATGCCCCGGATCAGGATTACGGCACCGCCCACGCGGTATTTGTGCCTTTTT TTGGCGTGCCCGCAGCGACCATTACCGCCACCAGCCGCATCGCCCGCATGGGCAAGGCCGCCGTCATTCCCTGCGCGCAC TACCGCCTACCCGGCGGCCGCTACGAAATCGAATTCGGCCCGGCGCTTGAAGATTTTCCCAGTGGCGACGATAAAGCGGA TACAGCTCGGGTTAATAGCACAATTGAGCACTATGTGCGCAAGCATCCCGAGCAGTATCTCTGGGTTCACAAGCGGTTTA AACACCAAAAGAACGGACAATCGCCCTATAAGTAA
Upstream 100 bases:
>100_bases TTCCATGCCAGCTGGCTTAGCCTTTGGCTCCCTTTAGCGCTTCTGCTGGCCCGACTCAGCGAGCGCCCAAGCATCCATCC CAACAGTCGTTGAGATTACC
Downstream 100 bases:
>100_bases ACCTACTTTCTGACCAGCACCACCACCACGCTATTTCCCGAACTATCGAATACTTTCTCCAAGGAAAAGCGCGGTTCTTG CAACGCAAGAAGTCGATCTT
Product: lipid A biosynthesis lauroyl acyltransferase
Products: NA
Alternate protein names: Heat shock protein B [H]
Number of amino acids: Translated: 304; Mature: 303
Protein sequence:
>304_residues MGKRINRPSRLSDPRLYPSWLGVGLFWLVGQLPWTVLLAAGRGLGHLAWHLTKKRRHVVQTNIRFCFPELSAEEQETLAR RCMVSTGEAILEMAGSFSNHRINLNNRLTINGLEHVRNAQAAGQGVLLLGMHFNSIDVGSRLLSCAFDMNAVYRPNDNLV IDRLINKGRLNYMKGIVKRTDIRHIVRLLRKGDIVWYAPDQDYGTAHAVFVPFFGVPAATITATSRIARMGKAAVIPCAH YRLPGGRYEIEFGPALEDFPSGDDKADTARVNSTIEHYVRKHPEQYLWVHKRFKHQKNGQSPYK
Sequences:
>Translated_304_residues MGKRINRPSRLSDPRLYPSWLGVGLFWLVGQLPWTVLLAAGRGLGHLAWHLTKKRRHVVQTNIRFCFPELSAEEQETLAR RCMVSTGEAILEMAGSFSNHRINLNNRLTINGLEHVRNAQAAGQGVLLLGMHFNSIDVGSRLLSCAFDMNAVYRPNDNLV IDRLINKGRLNYMKGIVKRTDIRHIVRLLRKGDIVWYAPDQDYGTAHAVFVPFFGVPAATITATSRIARMGKAAVIPCAH YRLPGGRYEIEFGPALEDFPSGDDKADTARVNSTIEHYVRKHPEQYLWVHKRFKHQKNGQSPYK >Mature_303_residues GKRINRPSRLSDPRLYPSWLGVGLFWLVGQLPWTVLLAAGRGLGHLAWHLTKKRRHVVQTNIRFCFPELSAEEQETLARR CMVSTGEAILEMAGSFSNHRINLNNRLTINGLEHVRNAQAAGQGVLLLGMHFNSIDVGSRLLSCAFDMNAVYRPNDNLVI DRLINKGRLNYMKGIVKRTDIRHIVRLLRKGDIVWYAPDQDYGTAHAVFVPFFGVPAATITATSRIARMGKAAVIPCAHY RLPGGRYEIEFGPALEDFPSGDDKADTARVNSTIEHYVRKHPEQYLWVHKRFKHQKNGQSPYK
Specific function: Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA. Has 10 fold selectivity for lauroyl- ACP over myristoyl-ACP [H]
COG id: COG1560
COG function: function code M; Lauroyl/myristoyl acyltransferase
Gene ontology:
Cell location: Cell inner membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the htrB/msbB family [H]
Homologues:
Organism=Escherichia coli, GI1787292, Length=296, Percent_Identity=39.527027027027, Blast_Score=221, Evalue=6e-59, Organism=Escherichia coli, GI87082094, Length=292, Percent_Identity=35.2739726027397, Blast_Score=198, Evalue=4e-52, Organism=Escherichia coli, GI1788161, Length=295, Percent_Identity=29.4915254237288, Blast_Score=125, Evalue=4e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004960 - InterPro: IPR011920 [H]
Pfam domain/function: PF03279 Lip_A_acyltrans [H]
EC number: 2.3.1.-
Molecular weight: Translated: 34433; Mature: 34302
Theoretical pI: Translated: 10.50; Mature: 10.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKRINRPSRLSDPRLYPSWLGVGLFWLVGQLPWTVLLAAGRGLGHLAWHLTKKRRHVVQ CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH TNIRFCFPELSAEEQETLARRCMVSTGEAILEMAGSFSNHRINLNNRLTINGLEHVRNAQ HCCEEECCCCCCHHHHHHHHHHHHHCHHHHHHHHCCCCCCEEECCCEEEECHHHHHHHHH AAGQGVLLLGMHFNSIDVGSRLLSCAFDMNAVYRPNDNLVIDRLINKGRLNYMKGIVKRT HCCCCEEEEEEECCCHHHHHHHHHHHHCCCCEECCCCCEEHHHHHCCCHHHHHHHHHHHH DIRHIVRLLRKGDIVWYAPDQDYGTAHAVFVPFFGVPAATITATSRIARMGKAAVIPCAH HHHHHHHHHHHCCEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEHHH YRLPGGRYEIEFGPALEDFPSGDDKADTARVNSTIEHYVRKHPEQYLWVHKRFKHQKNGQ EECCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC SPYK CCCC >Mature Secondary Structure GKRINRPSRLSDPRLYPSWLGVGLFWLVGQLPWTVLLAAGRGLGHLAWHLTKKRRHVVQ CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH TNIRFCFPELSAEEQETLARRCMVSTGEAILEMAGSFSNHRINLNNRLTINGLEHVRNAQ HCCEEECCCCCCHHHHHHHHHHHHHCHHHHHHHHCCCCCCEEECCCEEEECHHHHHHHHH AAGQGVLLLGMHFNSIDVGSRLLSCAFDMNAVYRPNDNLVIDRLINKGRLNYMKGIVKRT HCCCCEEEEEEECCCHHHHHHHHHHHHCCCCEECCCCCEEHHHHHCCCHHHHHHHHHHHH DIRHIVRLLRKGDIVWYAPDQDYGTAHAVFVPFFGVPAATITATSRIARMGKAAVIPCAH HHHHHHHHHHHCCEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEHHH YRLPGGRYEIEFGPALEDFPSGDDKADTARVNSTIEHYVRKHPEQYLWVHKRFKHQKNGQ EECCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC SPYK CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Acyltransferases [C]
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]