Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
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Accession | NC_008260 |
Length | 3,120,143 |
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The map label for this gene is 110835108
Identifier: 110835108
GI number: 110835108
Start: 2568160
End: 2568846
Strand: Direct
Name: 110835108
Synonym: ABO_2247
Alternate gene names: NA
Gene position: 2568160-2568846 (Clockwise)
Preceding gene: 110835107
Following gene: 110835109
Centisome position: 82.31
GC content: 60.99
Gene sequence:
>687_bases TTGAGCCTGAAAGACCAGTCACGCTCTCCCGGGCTGCTCTCTACCACCGCCCTGGCCACCGTGGAGCGAGCCATCAACAC GGCCCTGCGATCTGACCCCGCCAGCGCAGAGCGCCTGGCCGTACACGCCGGCCGGCTTATTGCCATTGAGGCCACACTGC CCCCCGTGGCCATCTACGGGTTAATCGTGGAAGACGGCGTGGAGCTCTACCACCGCAGTGATGCCACCCCGGATGTGGCG GTGAAAGGCAGCCCCATGGATCTGGCCTCGCTACTGCTCAACTGGAAAACCCGCCCCGGCGTTATTGGCGGCCCCGTGAA TATCAATGGCAACCGTGATTTCCTACAGGAGCTGCAGCAGATTGCCAACGATCTGCAGATCGATTGGGGCGCCATCCTGG AGCCGATTACCGGATCAGAATTGGCACAGCAATTGGATTACAGTGCTCGGCGCCTGTTCGGCTGGGCCAAACAAGCGGCC TCCCGTCTGACCGAGCAGCTAGGCGATTATGTCGGCAACGAATCCGGGCTTACCCCCCGTCGCCGTGACGTTTACGAATT CGGCCAAGACGTGGATGAACTGCGTATGGATGTGGACCGCCTGGACGCTCGCATTCAACGGTTAAGAAGCCGCTCGACTT CCTCATCACCCTCCTCGCCACAGGATTCCGGGAGCTCACCACACTAA
Upstream 100 bases:
>100_bases AAGATACCCTACAGGGCATGATGGACAACGCTGGCTTTGCCCGCACCGAATACTTCAACATGATTGGCGGCATCGTGGCC CTGCACAGAGGATTCAAATT
Downstream 100 bases:
>100_bases TGCCGCCGATTACCCGTATGCTGGTGGTGATCCATGTGATCTGCCGCTACCGGCTAATATCCTTGCTTCCCCCACACCCC ACCAAGGGGTTATTGCTTAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 228; Mature: 227
Protein sequence:
>228_residues MSLKDQSRSPGLLSTTALATVERAINTALRSDPASAERLAVHAGRLIAIEATLPPVAIYGLIVEDGVELYHRSDATPDVA VKGSPMDLASLLLNWKTRPGVIGGPVNINGNRDFLQELQQIANDLQIDWGAILEPITGSELAQQLDYSARRLFGWAKQAA SRLTEQLGDYVGNESGLTPRRRDVYEFGQDVDELRMDVDRLDARIQRLRSRSTSSSPSSPQDSGSSPH
Sequences:
>Translated_228_residues MSLKDQSRSPGLLSTTALATVERAINTALRSDPASAERLAVHAGRLIAIEATLPPVAIYGLIVEDGVELYHRSDATPDVA VKGSPMDLASLLLNWKTRPGVIGGPVNINGNRDFLQELQQIANDLQIDWGAILEPITGSELAQQLDYSARRLFGWAKQAA SRLTEQLGDYVGNESGLTPRRRDVYEFGQDVDELRMDVDRLDARIQRLRSRSTSSSPSSPQDSGSSPH >Mature_227_residues SLKDQSRSPGLLSTTALATVERAINTALRSDPASAERLAVHAGRLIAIEATLPPVAIYGLIVEDGVELYHRSDATPDVAV KGSPMDLASLLLNWKTRPGVIGGPVNINGNRDFLQELQQIANDLQIDWGAILEPITGSELAQQLDYSARRLFGWAKQAAS RLTEQLGDYVGNESGLTPRRRDVYEFGQDVDELRMDVDRLDARIQRLRSRSTSSSPSSPQDSGSSPH
Specific function: Unknown
COG id: COG3165
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24846; Mature: 24715
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLKDQSRSPGLLSTTALATVERAINTALRSDPASAERLAVHAGRLIAIEATLPPVAIYG CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCCHHHHH LIVEDGVELYHRSDATPDVAVKGSPMDLASLLLNWKTRPGVIGGPVNINGNRDFLQELQQ HHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHH IANDLQIDWGAILEPITGSELAQQLDYSARRLFGWAKQAASRLTEQLGDYVGNESGLTPR HHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC RRDVYEFGQDVDELRMDVDRLDARIQRLRSRSTSSSPSSPQDSGSSPH HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure SLKDQSRSPGLLSTTALATVERAINTALRSDPASAERLAVHAGRLIAIEATLPPVAIYG CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCCHHHHH LIVEDGVELYHRSDATPDVAVKGSPMDLASLLLNWKTRPGVIGGPVNINGNRDFLQELQQ HHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHH IANDLQIDWGAILEPITGSELAQQLDYSARRLFGWAKQAASRLTEQLGDYVGNESGLTPR HHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC RRDVYEFGQDVDELRMDVDRLDARIQRLRSRSTSSSPSSPQDSGSSPH HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA