| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
Click here to switch to the map view.
The map label for this gene is mrcA [H]
Identifier: 110835099
GI number: 110835099
Start: 2555479
End: 2558043
Strand: Direct
Name: mrcA [H]
Synonym: ABO_2238
Alternate gene names: 110835099
Gene position: 2555479-2558043 (Clockwise)
Preceding gene: 110835087
Following gene: 110835102
Centisome position: 81.9
GC content: 57.47
Gene sequence:
>2565_bases ATGCGTTTACCCTCCTGGATCCGATACCTGCTGTTACTCCTTATTGCCGGCGCCGGTGGCGGCCTCGCGGCACTTGCCGC CTGCTACCTTTATTTGGCCCCACAATTGCCCCCGGCAAACCAGATTCGCGAGGTGGAGTACCAGATCCCTCTGCGCATCT ACAGCCGCGACATGAAGCTGATTGCAGAATACGGCGAAAAGCGTCGCCAGCCAGTGACTTTCGACGAACTGCCGCAACCA CTAATCCAAGCGGTACTCGCTGCGGAAGACGAACGCTTTTTCCAGCACAATGGGGTCGATTTGAAAGGTCTGTTACGGGC CTTCGTTGAGCTTGCTCGTTACCGAGAGATTCGTTCTGGCGGCTCCACCATCACCATGCAGGTCGCCCGGAACTTCTTTC TAGACCGTGAACAGCGTTTTTTGCGCAAGTTCAACGAAATCGTACTGGCCATTCAGATCGAAAGGGTTCTCAGCAAAGAA GAGATTCTTGAGCTTTACCTAAACAAGATCTATCTAGGCCACCGCGCCTATGGTGCCCAAGCGGCCTCACAGGTGTACTA CGGCAAGTCCGTGGGCGAACTCAGCCTGCCCCAGTGGGCCATGATTGCCGGCTTGCCGAAAGCCCCTTCCGCCTACAACC CCATTACGAACCCTCAGCGCGCCCGGGTACGACGCAACTGGATTCTTCATCGCATGCAGGAAACCGGCGTCATTACCGCT GAGCAGAAAGAGCAAGCGCAGGCTGCGCCAGTCAGCGCCCGCTTCCACGCAGCGTCACCGGAAGTAGACGCCAGCTACCT AGGGGAAATGGCTCGCTTGCAGGCCATGAAGCTGGTAGATGCCAACATTTACACCGACGGCATTCGCATCATCACCACCG TGGACAGCAAGCGCCAGCAAGCTGCCGTTAACGCCCTGCGCAAAGGTTTACACAGCTATGACGAACGACATGGCTACCGT GGTCCGCTAGCACAACTGGATGTGAGTGACGCACCCACCCTCCCCTCCCCATCCAATGCAGATAACGAAGCCCCTCCGCA GGACAGCACCGACACAACGGAGGTGATCGAGGAAGCTGAACTAGAAAAAACCATCACCGGCCTCAATCCTGATGTGGCCA ACTGGGCTGAACGCATCAAGGACCAACGACGCATAGGCCCCCTGCAACCGGCCATCGTTACCGCCGTAGGCAAAAAAGAC GCAGAGATTCTGTTCCGTGACGGCAAACGCAGCCCACTTGCCTGGGATGACATCCGTTGGGCTCGCCCACAATTAAACAA TAAATATGTAGGCAAGGAGCCAACCCAGGCCAGCGACGTCCTCAGCAAGGGAGACGTCATCTACGTTCGTCCAGCCGGCA ATGACGAGGATCGGCATTGGCGGCTCGCGCAGCTACCAAGAGCTCAATCCGCACTGGTCTCCCTTGATCCGACCAGCGGC GCCATTGTTGCTCTGCAAGGTGGCTACAGCTTCTCCACCTCCAATTTCAACCGTGCCGTACAAGGCGAGCGCCAAGCCGG CTCCGTATTTAAGCCCTTCATCTATACCTCAGCCATGGAAAGCGGCTTCACCCCAGCCACCATCATCAACGACGCCCCCG TGGTCTTTGACGACAACAAGCTGGAAACTGCTTGGCGACCCACCGGCGCCAGCGGTAAATTCTTTGGCCCCATCCGCATG CGCGAAGCCCTTTATCGCTCCCTAAACCTAGTTTCTATCCGCATCCTTCGGCAAATCGGGATTAGCCAGGCCATGGGCAC ACTGAAACGTTTTGGCCTACCGACAGACACCTTCCAGCGAGATCTTTCGCTGGCACTGGGCAGCGCCAGCGTCACCCCCA TGGATATTGCCGCTGCCTACAGCATCTTTGCCAATGGCGGCTACCGCGTTACCCCATGGAGCATCCTGCAAATAGAAAAG GACAACGGAGAGGTGCTTTGGAAAGCGCCGGAAATCACCTTCTGCGAGCACCACTGTCAGGCACCGACAACCGGCAACCC GCCAGCTGAGAACAACTCAACCCGTCACACCGATGACAGCAACAGCTTTGAAAACGCTCTAGAGCCACTGCAACCCCCCC CGGTCATGGCTCCCCGGGTTGTTGATGCTCGTATTGCCTGGCTAATGAACTCCATACTCCAAGATGTTGTGCGTCGCGGC ACTGGTCACCAGGCTAACCGTCTGGGTCGCCGGGATCTGGCAGGCAAAACCGGCACGACCAATGATCAGTTCGACGCCTG GTTTTCCGGCTACTCGCCGGATCTGGTTGCCACCGTCTGGGTTGGATTTGATAACCCTGCCACACTAGGCTGGGGCGAAT ATGGCGGCAAGGCAGCGCTACCCATCTGGATGGACTACATGGGCCCAGCCCTGAAAGGAGTGCCCGAGCACCAACTGAAA CAACCCTCCGGCATCGCTACCGTACGCATCGATCCAGATAGTGGCCTGCTAGCTCGGCCGGAGAATCCGGACTCCATTCG CGAGTACTTCATTGACAGTCAGGTTCCCAAACTGGAACCCGCTCGCGGCCCGAATGGACACAGTGCGCCGGAACAGATCT TTTGA
Upstream 100 bases:
>100_bases GAACAGATATTAGATCACAACAAGCATTCCACCATATAATGACCCACTTCACGGGCCGGCTAGGCCTTTCTACCGATCCC AGCCAGTAGTTGCCGAAAAC
Downstream 100 bases:
>100_bases TGCACGCAGCGTACAACTCTGCTCTGCTGTGCTGTGCTGTGCTGAAACAGAAATGAGCAGCCATAAAAAAACCGCCGAAA GGCGGTTTTTTTATGGCTGG
Product: penicillin-binding protein
Products: NA
Alternate protein names: PBP-1a; PBP1a; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Penicillin-sensitive transpeptidase; DD-transpeptidase [H]
Number of amino acids: Translated: 854; Mature: 854
Protein sequence:
>854_residues MRLPSWIRYLLLLLIAGAGGGLAALAACYLYLAPQLPPANQIREVEYQIPLRIYSRDMKLIAEYGEKRRQPVTFDELPQP LIQAVLAAEDERFFQHNGVDLKGLLRAFVELARYREIRSGGSTITMQVARNFFLDREQRFLRKFNEIVLAIQIERVLSKE EILELYLNKIYLGHRAYGAQAASQVYYGKSVGELSLPQWAMIAGLPKAPSAYNPITNPQRARVRRNWILHRMQETGVITA EQKEQAQAAPVSARFHAASPEVDASYLGEMARLQAMKLVDANIYTDGIRIITTVDSKRQQAAVNALRKGLHSYDERHGYR GPLAQLDVSDAPTLPSPSNADNEAPPQDSTDTTEVIEEAELEKTITGLNPDVANWAERIKDQRRIGPLQPAIVTAVGKKD AEILFRDGKRSPLAWDDIRWARPQLNNKYVGKEPTQASDVLSKGDVIYVRPAGNDEDRHWRLAQLPRAQSALVSLDPTSG AIVALQGGYSFSTSNFNRAVQGERQAGSVFKPFIYTSAMESGFTPATIINDAPVVFDDNKLETAWRPTGASGKFFGPIRM REALYRSLNLVSIRILRQIGISQAMGTLKRFGLPTDTFQRDLSLALGSASVTPMDIAAAYSIFANGGYRVTPWSILQIEK DNGEVLWKAPEITFCEHHCQAPTTGNPPAENNSTRHTDDSNSFENALEPLQPPPVMAPRVVDARIAWLMNSILQDVVRRG TGHQANRLGRRDLAGKTGTTNDQFDAWFSGYSPDLVATVWVGFDNPATLGWGEYGGKAALPIWMDYMGPALKGVPEHQLK QPSGIATVRIDPDSGLLARPENPDSIREYFIDSQVPKLEPARGPNGHSAPEQIF
Sequences:
>Translated_854_residues MRLPSWIRYLLLLLIAGAGGGLAALAACYLYLAPQLPPANQIREVEYQIPLRIYSRDMKLIAEYGEKRRQPVTFDELPQP LIQAVLAAEDERFFQHNGVDLKGLLRAFVELARYREIRSGGSTITMQVARNFFLDREQRFLRKFNEIVLAIQIERVLSKE EILELYLNKIYLGHRAYGAQAASQVYYGKSVGELSLPQWAMIAGLPKAPSAYNPITNPQRARVRRNWILHRMQETGVITA EQKEQAQAAPVSARFHAASPEVDASYLGEMARLQAMKLVDANIYTDGIRIITTVDSKRQQAAVNALRKGLHSYDERHGYR GPLAQLDVSDAPTLPSPSNADNEAPPQDSTDTTEVIEEAELEKTITGLNPDVANWAERIKDQRRIGPLQPAIVTAVGKKD AEILFRDGKRSPLAWDDIRWARPQLNNKYVGKEPTQASDVLSKGDVIYVRPAGNDEDRHWRLAQLPRAQSALVSLDPTSG AIVALQGGYSFSTSNFNRAVQGERQAGSVFKPFIYTSAMESGFTPATIINDAPVVFDDNKLETAWRPTGASGKFFGPIRM REALYRSLNLVSIRILRQIGISQAMGTLKRFGLPTDTFQRDLSLALGSASVTPMDIAAAYSIFANGGYRVTPWSILQIEK DNGEVLWKAPEITFCEHHCQAPTTGNPPAENNSTRHTDDSNSFENALEPLQPPPVMAPRVVDARIAWLMNSILQDVVRRG TGHQANRLGRRDLAGKTGTTNDQFDAWFSGYSPDLVATVWVGFDNPATLGWGEYGGKAALPIWMDYMGPALKGVPEHQLK QPSGIATVRIDPDSGLLARPENPDSIREYFIDSQVPKLEPARGPNGHSAPEQIF >Mature_854_residues MRLPSWIRYLLLLLIAGAGGGLAALAACYLYLAPQLPPANQIREVEYQIPLRIYSRDMKLIAEYGEKRRQPVTFDELPQP LIQAVLAAEDERFFQHNGVDLKGLLRAFVELARYREIRSGGSTITMQVARNFFLDREQRFLRKFNEIVLAIQIERVLSKE EILELYLNKIYLGHRAYGAQAASQVYYGKSVGELSLPQWAMIAGLPKAPSAYNPITNPQRARVRRNWILHRMQETGVITA EQKEQAQAAPVSARFHAASPEVDASYLGEMARLQAMKLVDANIYTDGIRIITTVDSKRQQAAVNALRKGLHSYDERHGYR GPLAQLDVSDAPTLPSPSNADNEAPPQDSTDTTEVIEEAELEKTITGLNPDVANWAERIKDQRRIGPLQPAIVTAVGKKD AEILFRDGKRSPLAWDDIRWARPQLNNKYVGKEPTQASDVLSKGDVIYVRPAGNDEDRHWRLAQLPRAQSALVSLDPTSG AIVALQGGYSFSTSNFNRAVQGERQAGSVFKPFIYTSAMESGFTPATIINDAPVVFDDNKLETAWRPTGASGKFFGPIRM REALYRSLNLVSIRILRQIGISQAMGTLKRFGLPTDTFQRDLSLALGSASVTPMDIAAAYSIFANGGYRVTPWSILQIEK DNGEVLWKAPEITFCEHHCQAPTTGNPPAENNSTRHTDDSNSFENALEPLQPPPVMAPRVVDARIAWLMNSILQDVVRRG TGHQANRLGRRDLAGKTGTTNDQFDAWFSGYSPDLVATVWVGFDNPATLGWGEYGGKAALPIWMDYMGPALKGVPEHQLK QPSGIATVRIDPDSGLLARPENPDSIREYFIDSQVPKLEPARGPNGHSAPEQIF
Specific function: Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal
COG id: COG5009
COG function: function code M; Membrane carboxypeptidase/penicillin-binding protein
Gene ontology:
Cell location: Cell inner membrane; Single-pass type II membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI87082258, Length=869, Percent_Identity=40.8515535097814, Blast_Score=606, Evalue=1e-174, Organism=Escherichia coli, GI1786343, Length=264, Percent_Identity=32.5757575757576, Blast_Score=125, Evalue=8e-30, Organism=Escherichia coli, GI1788867, Length=184, Percent_Identity=40.2173913043478, Blast_Score=115, Evalue=1e-26, Organism=Escherichia coli, GI1789601, Length=232, Percent_Identity=29.7413793103448, Blast_Score=90, Evalue=5e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011816 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.2.-; 3.4.-.-
Molecular weight: Translated: 94743; Mature: 94743
Theoretical pI: Translated: 7.44; Mature: 7.44
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLPSWIRYLLLLLIAGAGGGLAALAACYLYLAPQLPPANQIREVEYQIPLRIYSRDMKL CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHEECCHHHHHHHHHH IAEYGEKRRQPVTFDELPQPLIQAVLAAEDERFFQHNGVDLKGLLRAFVELARYREIRSG HHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC GSTITMQVARNFFLDREQRFLRKFNEIVLAIQIERVLSKEEILELYLNKIYLGHRAYGAQ CCEEEHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHCHHHHHHHHHHHHHHCCHHHCHH AASQVYYGKSVGELSLPQWAMIAGLPKAPSAYNPITNPQRARVRRNWILHRMQETGVITA HHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEE EQKEQAQAAPVSARFHAASPEVDASYLGEMARLQAMKLVDANIYTDGIRIITTVDSKRQQ CHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCEEECCEEEEEECCCHHHH AAVNALRKGLHSYDERHGYRGPLAQLDVSDAPTLPSPSNADNEAPPQDSTDTTEVIEEAE HHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH LEKTITGLNPDVANWAERIKDQRRIGPLQPAIVTAVGKKDAEILFRDGKRSPLAWDDIRW HHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCC ARPQLNNKYVGKEPTQASDVLSKGDVIYVRPAGNDEDRHWRLAQLPRAQSALVSLDPTSG CCCCCCCCCCCCCCCCHHHHHCCCCEEEEECCCCCCCCCCHHHHCCCCHHHEEEECCCCC AIVALQGGYSFSTSNFNRAVQGERQAGSVFKPFIYTSAMESGFTPATIINDAPVVFDDNK EEEEEECCCEECCCCCCHHHCCCHHCCCHHHHHHHHHHHHCCCCCEEEECCCCEEECCCC LETAWRPTGASGKFFGPIRMREALYRSLNLVSIRILRQIGISQAMGTLKRFGLPTDTFQR CCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH DLSLALGSASVTPMDIAAAYSIFANGGYRVTPWSILQIEKDNGEVLWKAPEITFCEHHCQ HHHHHHCCCCCCHHHHHHHHHHHCCCCEEECCEEEEEEECCCCEEEEECCCEEEHHHHCC APTTGNPPAENNSTRHTDDSNSFENALEPLQPPPVMAPRVVDARIAWLMNSILQDVVRRG CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC TGHQANRLGRRDLAGKTGTTNDQFDAWFSGYSPDLVATVWVGFDNPATLGWGEYGGKAAL CCCHHHHCCHHHCCCCCCCCCCCCHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEC PIWMDYMGPALKGVPEHQLKQPSGIATVRIDPDSGLLARPENPDSIREYFIDSQVPKLEP HHHHHHHCHHHCCCCHHHCCCCCCEEEEEECCCCCCEECCCCHHHHHHHHHCCCCCCCCC ARGPNGHSAPEQIF CCCCCCCCCCCCCC >Mature Secondary Structure MRLPSWIRYLLLLLIAGAGGGLAALAACYLYLAPQLPPANQIREVEYQIPLRIYSRDMKL CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHEECCHHHHHHHHHH IAEYGEKRRQPVTFDELPQPLIQAVLAAEDERFFQHNGVDLKGLLRAFVELARYREIRSG HHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC GSTITMQVARNFFLDREQRFLRKFNEIVLAIQIERVLSKEEILELYLNKIYLGHRAYGAQ CCEEEHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHCHHHHHHHHHHHHHHCCHHHCHH AASQVYYGKSVGELSLPQWAMIAGLPKAPSAYNPITNPQRARVRRNWILHRMQETGVITA HHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEE EQKEQAQAAPVSARFHAASPEVDASYLGEMARLQAMKLVDANIYTDGIRIITTVDSKRQQ CHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCEEECCEEEEEECCCHHHH AAVNALRKGLHSYDERHGYRGPLAQLDVSDAPTLPSPSNADNEAPPQDSTDTTEVIEEAE HHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH LEKTITGLNPDVANWAERIKDQRRIGPLQPAIVTAVGKKDAEILFRDGKRSPLAWDDIRW HHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCC ARPQLNNKYVGKEPTQASDVLSKGDVIYVRPAGNDEDRHWRLAQLPRAQSALVSLDPTSG CCCCCCCCCCCCCCCCHHHHHCCCCEEEEECCCCCCCCCCHHHHCCCCHHHEEEECCCCC AIVALQGGYSFSTSNFNRAVQGERQAGSVFKPFIYTSAMESGFTPATIINDAPVVFDDNK EEEEEECCCEECCCCCCHHHCCCHHCCCHHHHHHHHHHHHCCCCCEEEECCCCEEECCCC LETAWRPTGASGKFFGPIRMREALYRSLNLVSIRILRQIGISQAMGTLKRFGLPTDTFQR CCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH DLSLALGSASVTPMDIAAAYSIFANGGYRVTPWSILQIEKDNGEVLWKAPEITFCEHHCQ HHHHHHCCCCCCHHHHHHHHHHHCCCCEEECCEEEEEEECCCCEEEEECCCEEEHHHHCC APTTGNPPAENNSTRHTDDSNSFENALEPLQPPPVMAPRVVDARIAWLMNSILQDVVRRG CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC TGHQANRLGRRDLAGKTGTTNDQFDAWFSGYSPDLVATVWVGFDNPATLGWGEYGGKAAL CCCHHHHCCHHHCCCCCCCCCCCCHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEC PIWMDYMGPALKGVPEHQLKQPSGIATVRIDPDSGLLARPENPDSIREYFIDSQVPKLEP HHHHHHHCHHHCCCCHHHCCCCCCEEEEEECCCCCCEECCCCHHHHHHHHHCCCCCCCCC ARGPNGHSAPEQIF CCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10984043; 7901733 [H]