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The map label for this gene is psd

Identifier: 110835074

GI number: 110835074

Start: 2525914

End: 2526789

Strand: Direct

Name: psd

Synonym: ABO_2213

Alternate gene names: 110835074

Gene position: 2525914-2526789 (Clockwise)

Preceding gene: 110835073

Following gene: 110835075

Centisome position: 80.96

GC content: 55.48

Gene sequence:

>876_bases
TTGAGCTTACGCGACAAACTGTTCGTTACCCTTCAATACCTTATTCCCCAACATGCTTTGTCTCGACTGGTGGGGATATT
GGCCCGCAGCGAAGTACCGTGGATCAAGACCACCTTCATCAACATGTTCATGAAACGGTTCGGTATTGATCTATCGGAAG
CGCAAATTGAAGACGCGGACCAATTCCCCACCTTCAATGCCTTTTTCACCCGAGCCCTGAAGGCCGATGCCCGCCCCCTA
GAGGCAAGCGAGAGCAACGATATCGCCAGCCCTGCGGACGGTGCCGTGAGCCAACTGGGTGCTATTCGCGCCAATCAAGT
CTTCCAAGCCAAAGGTCACGACTACTCGTTGTATGACTTGCTCGGCGGCGACAGTGCGCTAGCCAGTGAATTTACCAACG
GCCAGTTCGCCACCGTCTATCTCTCTCCCCGTGACTACCACCGGGTGCATATGCCTTTTACTGGCACCCTACGTGAAACT
CGCTATGTACCCGGCGACCTGTTTTCGGTGAACGAAGCCACCGCCAACGGCGTACCCAACCTGTTTGCTCGTAACGAACG
ACTGGTATGTATCTTCGATACCGAACAGGGCCCCATGGCGGTGATTCTGGTCGGCGCCATGATCGTGGCCGGCATCGAGA
CGGTCTTCAGCGGTCAGGTCACACCGCTACCCAAACAAGTGGTCACCACCGACTACCTGCGTAGCAAACCCATCGCGCTG
GAAAAAGGGGAAGAGCTAGGCCGTTTCCTGCTGGGCTCCACCGTGGTCATGCTGTTCCCGGAAGGCAAAGCCAAATTTGC
ACCAAACCTGAAACCCGGCAGCCAAGTACGAGTGCGCGGCAAACTTGGCGCTTATACCAACGAAAACAAACACTGA

Upstream 100 bases:

>100_bases
CCGGACACCCCTGCAGAAAAAAGTGCCTAAACCCATCGTTGACGGCGGAGCCCCCTAGCGGCAATTTCCGCCTTCTGAAA
AATGCTAAAGGACGTCACTC

Downstream 100 bases:

>100_bases
TCGCCCCACCCCCTTGTCCGCCGCAATAGCGTTCATTGCGGCGGGCGAGTATCCCCCCTGACACTTCCCCCGGTCCGCAC
GGCAACTGCCCTCCCGTGGA

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 290

Protein sequence:

>291_residues
MSLRDKLFVTLQYLIPQHALSRLVGILARSEVPWIKTTFINMFMKRFGIDLSEAQIEDADQFPTFNAFFTRALKADARPL
EASESNDIASPADGAVSQLGAIRANQVFQAKGHDYSLYDLLGGDSALASEFTNGQFATVYLSPRDYHRVHMPFTGTLRET
RYVPGDLFSVNEATANGVPNLFARNERLVCIFDTEQGPMAVILVGAMIVAGIETVFSGQVTPLPKQVVTTDYLRSKPIAL
EKGEELGRFLLGSTVVMLFPEGKAKFAPNLKPGSQVRVRGKLGAYTNENKH

Sequences:

>Translated_291_residues
MSLRDKLFVTLQYLIPQHALSRLVGILARSEVPWIKTTFINMFMKRFGIDLSEAQIEDADQFPTFNAFFTRALKADARPL
EASESNDIASPADGAVSQLGAIRANQVFQAKGHDYSLYDLLGGDSALASEFTNGQFATVYLSPRDYHRVHMPFTGTLRET
RYVPGDLFSVNEATANGVPNLFARNERLVCIFDTEQGPMAVILVGAMIVAGIETVFSGQVTPLPKQVVTTDYLRSKPIAL
EKGEELGRFLLGSTVVMLFPEGKAKFAPNLKPGSQVRVRGKLGAYTNENKH
>Mature_290_residues
SLRDKLFVTLQYLIPQHALSRLVGILARSEVPWIKTTFINMFMKRFGIDLSEAQIEDADQFPTFNAFFTRALKADARPLE
ASESNDIASPADGAVSQLGAIRANQVFQAKGHDYSLYDLLGGDSALASEFTNGQFATVYLSPRDYHRVHMPFTGTLRETR
YVPGDLFSVNEATANGVPNLFARNERLVCIFDTEQGPMAVILVGAMIVAGIETVFSGQVTPLPKQVVTTDYLRSKPIALE
KGEELGRFLLGSTVVMLFPEGKAKFAPNLKPGSQVRVRGKLGAYTNENKH

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily

Homologues:

Organism=Homo sapiens, GI13489112, Length=305, Percent_Identity=32.1311475409836, Blast_Score=143, Evalue=2e-34,
Organism=Escherichia coli, GI1790604, Length=283, Percent_Identity=48.7632508833922, Blast_Score=275, Evalue=3e-75,
Organism=Caenorhabditis elegans, GI71980843, Length=251, Percent_Identity=31.4741035856574, Blast_Score=129, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI71980840, Length=270, Percent_Identity=31.4814814814815, Blast_Score=128, Evalue=4e-30,
Organism=Saccharomyces cerevisiae, GI6321609, Length=241, Percent_Identity=29.8755186721992, Blast_Score=101, Evalue=1e-22,
Organism=Saccharomyces cerevisiae, GI6324160, Length=160, Percent_Identity=35, Blast_Score=84, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24649526, Length=314, Percent_Identity=27.3885350318471, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI24649528, Length=314, Percent_Identity=27.3885350318471, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI24649524, Length=314, Percent_Identity=27.3885350318471, Blast_Score=112, Evalue=4e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_ALCBS (Q0VMD7)

Other databases:

- EMBL:   AM286690
- RefSeq:   YP_693933.1
- STRING:   Q0VMD7
- GeneID:   4211226
- GenomeReviews:   AM286690_GR
- KEGG:   abo:ABO_2213
- NMPDR:   fig|393595.12.peg.2212
- eggNOG:   COG0688
- HOGENOM:   HBG302256
- OMA:   YFDQDLH
- PhylomeDB:   Q0VMD7
- BioCyc:   ABOR393595:ABO_2213-MONOMER
- HAMAP:   MF_00662
- InterPro:   IPR003817
- InterPro:   IPR005221
- PANTHER:   PTHR10067
- TIGRFAMs:   TIGR00163

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 32065; Mature: 31934

Theoretical pI: Translated: 7.71; Mature: 7.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLRDKLFVTLQYLIPQHALSRLVGILARSEVPWIKTTFINMFMKRFGIDLSEAQIEDAD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHCCCHH
QFPTFNAFFTRALKADARPLEASESNDIASPADGAVSQLGAIRANQVFQAKGHDYSLYDL
CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCEEEEEE
LGGDSALASEFTNGQFATVYLSPRDYHRVHMPFTGTLRETRYVPGDLFSVNEATANGVPN
CCCCHHHHHHCCCCEEEEEEECCCCCEEEECCCCCCHHHCCCCCCCCEECCCHHCCCCCH
LFARNERLVCIFDTEQGPMAVILVGAMIVAGIETVFSGQVTPLPKQVVTTDYLRSKPIAL
HHCCCCEEEEEEECCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCC
EKGEELGRFLLGSTVVMLFPEGKAKFAPNLKPGSQVRVRGKLGAYTNENKH
CCHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCC
>Mature Secondary Structure 
SLRDKLFVTLQYLIPQHALSRLVGILARSEVPWIKTTFINMFMKRFGIDLSEAQIEDAD
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHCCCHH
QFPTFNAFFTRALKADARPLEASESNDIASPADGAVSQLGAIRANQVFQAKGHDYSLYDL
CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCEEEEEE
LGGDSALASEFTNGQFATVYLSPRDYHRVHMPFTGTLRETRYVPGDLFSVNEATANGVPN
CCCCHHHHHHCCCCEEEEEEECCCCCEEEECCCCCCHHHCCCCCCCCEECCCHHCCCCCH
LFARNERLVCIFDTEQGPMAVILVGAMIVAGIETVFSGQVTPLPKQVVTTDYLRSKPIAL
HHCCCCEEEEEEECCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCC
EKGEELGRFLLGSTVVMLFPEGKAKFAPNLKPGSQVRVRGKLGAYTNENKH
CCHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA