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The map label for this gene is xseB [H]

Identifier: 110835025

GI number: 110835025

Start: 2473752

End: 2473994

Strand: Direct

Name: xseB [H]

Synonym: ABO_2164

Alternate gene names: 110835025

Gene position: 2473752-2473994 (Clockwise)

Preceding gene: 110835024

Following gene: 110835026

Centisome position: 79.28

GC content: 53.09

Gene sequence:

>243_bases
ATGGCAAAAAACGCACCCCCCGCGCTGGAGACCTCGCTAGACAACCTAGAAGTTCTGGTGGAAAAAATGGAGTCTGGTGA
ACTAACCCTGGAAGATTCCCTGAAAGCCTTCGAGGAAGGTGTTCGCCTGTCCCGGGAATGCCAACAAGCCCTGCAACAAG
CGGAACAAAAAGTACGCATCCTGCTGGAACAGAACACCGAGGCAGACCCTGAGCCCTTTATCGGTGGTGACAATGAGCAG
TAA

Upstream 100 bases:

>100_bases
TTCGCCACACCCGCTGCATTACTGTTGCCGCCAACATACCCCGCGGCAGGGGCAGACACAGCAAAAACGGGGTCCTAGTG
GCGGATCCGAGGAGACGCTC

Downstream 100 bases:

>100_bases
GGCAACACGCGAATTCGCCGCCCTGAACCAACTCACGGATACCGCCAAGGCTCGTCTGGAGCAGGCGCTGGACCATTACT
TGCCGGCCCATAGTGCCGCC

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit [H]

Number of amino acids: Translated: 80; Mature: 79

Protein sequence:

>80_residues
MAKNAPPALETSLDNLEVLVEKMESGELTLEDSLKAFEEGVRLSRECQQALQQAEQKVRILLEQNTEADPEPFIGGDNEQ

Sequences:

>Translated_80_residues
MAKNAPPALETSLDNLEVLVEKMESGELTLEDSLKAFEEGVRLSRECQQALQQAEQKVRILLEQNTEADPEPFIGGDNEQ
>Mature_79_residues
AKNAPPALETSLDNLEVLVEKMESGELTLEDSLKAFEEGVRLSRECQQALQQAEQKVRILLEQNTEADPEPFIGGDNEQ

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family [H]

Homologues:

Organism=Escherichia coli, GI1786624, Length=75, Percent_Identity=50.6666666666667, Blast_Score=68, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003761
- ProDom:   PD028235 [H]

Pfam domain/function: PF02609 Exonuc_VII_S [H]

EC number: =3.1.11.6 [H]

Molecular weight: Translated: 8914; Mature: 8783

Theoretical pI: Translated: 3.89; Mature: 3.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKNAPPALETSLDNLEVLVEKMESGELTLEDSLKAFEEGVRLSRECQQALQQAEQKVRI
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLEQNTEADPEPFIGGDNEQ
HHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AKNAPPALETSLDNLEVLVEKMESGELTLEDSLKAFEEGVRLSRECQQALQQAEQKVRI
CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLEQNTEADPEPFIGGDNEQ
HHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12928499 [H]