Click here to switch to the map view.

The map label for this gene is cph2 [H]

Identifier: 110834979

GI number: 110834979

Start: 2423342

End: 2424571

Strand: Direct

Name: cph2 [H]

Synonym: ABO_2118

Alternate gene names: 110834979

Gene position: 2423342-2424571 (Clockwise)

Preceding gene: 110834978

Following gene: 110834981

Centisome position: 77.67

GC content: 53.66

Gene sequence:

>1230_bases
GTGACTGCAAACCAGAACCACACGCCATTGCCAACCGGCAACGATATTACGTTACCGTGGCATCTGCGCTTGCCCAAACC
GCTGGAAAAGGACTTCCGCCTCTACTTCCGGGCCAGCGCGGCTAAGTCTACGCCTTGGGCCCTGGCTCTAGTGGCATTCC
TTATTGTCTCCGCCATGTTTATTGAGTCACGCATTTCTGTCGATGTCTTAAGCTTTTCCTGGCGGTCAAGGCTGTTCACC
TTGATGCTCACCGGTGGCTGCCTTGTGCTGCTGCGCAAACCTCAGTGGCGCAACTGGCTTCACGAAGCCACTCTAGTGCT
CGCTTTTGCCATCTCGCTCACCGGCAATTATCTAGGCGTCACCATTGAGCCCTCATTGTCCTATCCCTTTTTCTTGCATA
CACCACTGGCTATCCTGATGATCTGCATCTTGATCAGAGTGCCCTTCTATGTAGCACTGGGCAGCTCGGCGATCATGATT
GCTTGCATGATCTTTAGCCTGCAGCTCAACCCCGGCCGGTACCCCTTTGAACCAACCACCTTGGTGCTGGTCTCGCTGGC
CTTTACCTGCACTGGGCTGTTCGGCCAATATGTTTACGAACGGCTTCTGCGCCAGTACTTTCTCTCCGAACACGTGCTAT
TCCAGCACAGAAATGAATTACACTCCGCCAATCTGGTGCTGGAAAATCAGGCCACTGTCGACGGCATGACCGGCTGTATT
AATCGCCGGGGAATGGAAAGCCGCCTGAACCACCTTTATCACCAGCTAAAACAAAAAACCCCGGATGCCCCCGAGCGCAT
TACCCTGATATTGTTCGATATCGATTTCTTCAAACAATACAATGACACCTATGGCCACCCAGCCGGGGACGAGTGCCTGA
AAAAAGTAGCGAGTGTGCCGCTGGGGATGGTGCAAAGCGATACCGATTTCGTCGCTCGCTATGGTGGCGAGGAATTTGTC
ATTACCCTGGCGGACTCCAGCTTCAACGATGCACTGGTGTTTGCCGAGCGCATGCGTAACCGGGTAGAACAGCTCGGAAT
CCCCCACAGCGGCTCCCGGATCAGCCAAGTAGTTACCATCAGTGTCGGGGTCGCCTGCTCGGACAGCAATGCAGAAAATG
GCGGACAGCTGTTAAAGATGGCGGACGAAGCACTTTATCAGGCAAAAGGCTCCGGTAGAAACCGCGTAGCACTGATGAGC
AATCAAGGCGTGGTTGAGGTATTGAATTAA

Upstream 100 bases:

>100_bases
GCGGCGATTATCTGTTCGGCAACACTTTGCACTATGATGACTACATGATGCTCAAAAAACGCCGTCACCGATTCATGGAC
CGACAGGAGTCTTTACCGCT

Downstream 100 bases:

>100_bases
ACGGCGGCTACGCAAAACTGATTCATTGATTCTTACTTACAAAGGCCGCGCCCTGAATGTTAAGCGCGGCCAAGCCTTTA
GCTTTAGCGTCATATCAAAA

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 409; Mature: 408

Protein sequence:

>409_residues
MTANQNHTPLPTGNDITLPWHLRLPKPLEKDFRLYFRASAAKSTPWALALVAFLIVSAMFIESRISVDVLSFSWRSRLFT
LMLTGGCLVLLRKPQWRNWLHEATLVLAFAISLTGNYLGVTIEPSLSYPFFLHTPLAILMICILIRVPFYVALGSSAIMI
ACMIFSLQLNPGRYPFEPTTLVLVSLAFTCTGLFGQYVYERLLRQYFLSEHVLFQHRNELHSANLVLENQATVDGMTGCI
NRRGMESRLNHLYHQLKQKTPDAPERITLILFDIDFFKQYNDTYGHPAGDECLKKVASVPLGMVQSDTDFVARYGGEEFV
ITLADSSFNDALVFAERMRNRVEQLGIPHSGSRISQVVTISVGVACSDSNAENGGQLLKMADEALYQAKGSGRNRVALMS
NQGVVEVLN

Sequences:

>Translated_409_residues
MTANQNHTPLPTGNDITLPWHLRLPKPLEKDFRLYFRASAAKSTPWALALVAFLIVSAMFIESRISVDVLSFSWRSRLFT
LMLTGGCLVLLRKPQWRNWLHEATLVLAFAISLTGNYLGVTIEPSLSYPFFLHTPLAILMICILIRVPFYVALGSSAIMI
ACMIFSLQLNPGRYPFEPTTLVLVSLAFTCTGLFGQYVYERLLRQYFLSEHVLFQHRNELHSANLVLENQATVDGMTGCI
NRRGMESRLNHLYHQLKQKTPDAPERITLILFDIDFFKQYNDTYGHPAGDECLKKVASVPLGMVQSDTDFVARYGGEEFV
ITLADSSFNDALVFAERMRNRVEQLGIPHSGSRISQVVTISVGVACSDSNAENGGQLLKMADEALYQAKGSGRNRVALMS
NQGVVEVLN
>Mature_408_residues
TANQNHTPLPTGNDITLPWHLRLPKPLEKDFRLYFRASAAKSTPWALALVAFLIVSAMFIESRISVDVLSFSWRSRLFTL
MLTGGCLVLLRKPQWRNWLHEATLVLAFAISLTGNYLGVTIEPSLSYPFFLHTPLAILMICILIRVPFYVALGSSAIMIA
CMIFSLQLNPGRYPFEPTTLVLVSLAFTCTGLFGQYVYERLLRQYFLSEHVLFQHRNELHSANLVLENQATVDGMTGCIN
RRGMESRLNHLYHQLKQKTPDAPERITLILFDIDFFKQYNDTYGHPAGDECLKKVASVPLGMVQSDTDFVARYGGEEFVI
TLADSSFNDALVFAERMRNRVEQLGIPHSGSRISQVVTISVGVACSDSNAENGGQLLKMADEALYQAKGSGRNRVALMSN
QGVVEVLN

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=180, Percent_Identity=37.2222222222222, Blast_Score=119, Evalue=5e-28,
Organism=Escherichia coli, GI145693134, Length=272, Percent_Identity=33.0882352941176, Blast_Score=111, Evalue=7e-26,
Organism=Escherichia coli, GI1786584, Length=185, Percent_Identity=34.5945945945946, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI87081881, Length=173, Percent_Identity=38.150289017341, Blast_Score=98, Evalue=9e-22,
Organism=Escherichia coli, GI1787802, Length=174, Percent_Identity=32.7586206896552, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI1788381, Length=176, Percent_Identity=33.5227272727273, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787816, Length=176, Percent_Identity=34.0909090909091, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1787541, Length=181, Percent_Identity=29.8342541436464, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI87082007, Length=227, Percent_Identity=33.0396475770925, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1788085, Length=168, Percent_Identity=29.1666666666667, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787056, Length=172, Percent_Identity=31.3953488372093, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI87081977, Length=188, Percent_Identity=28.7234042553192, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 45804; Mature: 45672

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTANQNHTPLPTGNDITLPWHLRLPKPLEKDFRLYFRASAAKSTPWALALVAFLIVSAMF
CCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHEEEEEECCCCCCCHHHHHHHHHHHHHHH
IESRISVDVLSFSWRSRLFTLMLTGGCLVLLRKPQWRNWLHEATLVLAFAISLTGNYLGV
HHHHCCEEEEHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCEEEE
TIEPSLSYPFFLHTPLAILMICILIRVPFYVALGSSAIMIACMIFSLQLNPGRYPFEPTT
EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEECCCCCCCCCHH
LVLVSLAFTCTGLFGQYVYERLLRQYFLSEHVLFQHRNELHSANLVLENQATVDGMTGCI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHH
NRRGMESRLNHLYHQLKQKTPDAPERITLILFDIDFFKQYNDTYGHPAGDECLKKVASVP
HCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEHHHHHHHCCCCCCCCHHHHHHHHHHCC
LGMVQSDTDFVARYGGEEFVITLADSSFNDALVFAERMRNRVEQLGIPHSGSRISQVVTI
CCCCCCCHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHEEEEEE
SVGVACSDSNAENGGQLLKMADEALYQAKGSGRNRVALMSNQGVVEVLN
EEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECC
>Mature Secondary Structure 
TANQNHTPLPTGNDITLPWHLRLPKPLEKDFRLYFRASAAKSTPWALALVAFLIVSAMF
CCCCCCCCCCCCCEEEEEEEECCCCCCCHHHEEEEEECCCCCCCHHHHHHHHHHHHHHH
IESRISVDVLSFSWRSRLFTLMLTGGCLVLLRKPQWRNWLHEATLVLAFAISLTGNYLGV
HHHHCCEEEEHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCEEEE
TIEPSLSYPFFLHTPLAILMICILIRVPFYVALGSSAIMIACMIFSLQLNPGRYPFEPTT
EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEECCCCCCCCCHH
LVLVSLAFTCTGLFGQYVYERLLRQYFLSEHVLFQHRNELHSANLVLENQATVDGMTGCI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHH
NRRGMESRLNHLYHQLKQKTPDAPERITLILFDIDFFKQYNDTYGHPAGDECLKKVASVP
HCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEHHHHHHHCCCCCCCCHHHHHHHHHHCC
LGMVQSDTDFVARYGGEEFVITLADSSFNDALVFAERMRNRVEQLGIPHSGSRISQVVTI
CCCCCCCHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHEEEEEE
SVGVACSDSNAENGGQLLKMADEALYQAKGSGRNRVALMSNQGVVEVLN
EEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]