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The map label for this gene is rci [H]

Identifier: 110834925

GI number: 110834925

Start: 2352446

End: 2353549

Strand: Direct

Name: rci [H]

Synonym: ABO_2064

Alternate gene names: 110834925

Gene position: 2352446-2353549 (Clockwise)

Preceding gene: 110834924

Following gene: 110834926

Centisome position: 75.4

GC content: 56.79

Gene sequence:

>1104_bases
ATGGCTACACTCGTCAAAACCCCTTCCGGCACATGGAAAGCCGTCATTCGCAAAACGGGGTTCCCCACTACCTCAAAAAC
CTTTCGCACCAAACGCGATGCTGAAGATTGGTCGCGACGCACCGAAGATGAAATGGTGCGCGGTGTTTACATCCAACGCG
CCCCCGCAGAAAGAATGACCGTGGCGGATGCACTCAAGCGCTACCTGGCGGAAGTCTCCCCAACCAAGCGCCCGGCTTCA
GCAGCCTGCGACGTTCGACATTCCAAACCTCTAATCAAAGGACTGGGCAAATACTCGTTAGCAGCACTGTCCCCTGAGAT
TATCGCCAAGTATCGCGATGAACGCCTTGCTGGCCTGGACCGCAAAGATGCCAAGGGCAATCCTGATCCAAGACCGCGAT
CACCCAACACGGTAAGACTCGACCTTGCGTTGCTCGGGCATATGTTCACCACCGCTATCAGGGAATGGGGAATCGGCCTG
CCGTCCAATCCTGTACAAAATATTCGTCGCCCTGCCCCGCCACCTGGACGCGAGCGCCGACTAAACCAAACGGAAGAAGA
TCGCCTTATAGCTGCGGTCGATAGCCACTCCAACCCCATGCTGGGCTGGATCGTCCGGCTTGCCCTAGAAACCGGGATGC
GCTCAGCAGAGATCACCACGTTACGTCGCAACCAAATCGACCTGAAGCGACGGGTCGTACGCTTACTGGAAACCAAGAAC
ACAGCACCACGTACCGTCCCACTCTCCAGCACAGCGACAGCCATACTGCAGGAAGCTCTAGCCAATCCAGTTCGCCCCAT
CGACACAGATCTGGTGTTCTTTGGGGAACCAGGTAGAGACGGCCAGCGCCGCCCCTATAACTTCAACAAACCCTGGCTAA
AAGCGAAGGAAACCGCCGGAATGAAAGAGCTCCACTTCCACGACCTGCGTCATGAAGCCGTAAGCCGGTTAGTCGAAGGG
GGGCTCAGCGACCAGCAGGTGGCCGCCATCAGCGGCCACAAGTCCATGCAGATGCTGAAACGATACACCCACCTGCGCGC
GGAAGACCTAGTGAACGAGCTTGACTCAATCGCTGATCGCCGTAACCGAAGAGATGAATCGTGA

Upstream 100 bases:

>100_bases
TCAGCAACTATATTCCAGCCCTCCAGCCTAGGGCCAGTCGATTGCTCCCAAAAGTACAAATTCGGTACAGTGACCGAATC
TATCAGGGATCGATAAGACT

Downstream 100 bases:

>100_bases
AGTCTAAAGCTCTACCAGGTTTCAATAACTATTTCTCTCTCGATAAAACCCACAAAACACACCTTTATCTTAAATTAATT
TAATAAAGAGAATTTATTGG

Product: shufflon-specific DNA recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 366

Protein sequence:

>367_residues
MATLVKTPSGTWKAVIRKTGFPTTSKTFRTKRDAEDWSRRTEDEMVRGVYIQRAPAERMTVADALKRYLAEVSPTKRPAS
AACDVRHSKPLIKGLGKYSLAALSPEIIAKYRDERLAGLDRKDAKGNPDPRPRSPNTVRLDLALLGHMFTTAIREWGIGL
PSNPVQNIRRPAPPPGRERRLNQTEEDRLIAAVDSHSNPMLGWIVRLALETGMRSAEITTLRRNQIDLKRRVVRLLETKN
TAPRTVPLSSTATAILQEALANPVRPIDTDLVFFGEPGRDGQRRPYNFNKPWLKAKETAGMKELHFHDLRHEAVSRLVEG
GLSDQQVAAISGHKSMQMLKRYTHLRAEDLVNELDSIADRRNRRDES

Sequences:

>Translated_367_residues
MATLVKTPSGTWKAVIRKTGFPTTSKTFRTKRDAEDWSRRTEDEMVRGVYIQRAPAERMTVADALKRYLAEVSPTKRPAS
AACDVRHSKPLIKGLGKYSLAALSPEIIAKYRDERLAGLDRKDAKGNPDPRPRSPNTVRLDLALLGHMFTTAIREWGIGL
PSNPVQNIRRPAPPPGRERRLNQTEEDRLIAAVDSHSNPMLGWIVRLALETGMRSAEITTLRRNQIDLKRRVVRLLETKN
TAPRTVPLSSTATAILQEALANPVRPIDTDLVFFGEPGRDGQRRPYNFNKPWLKAKETAGMKELHFHDLRHEAVSRLVEG
GLSDQQVAAISGHKSMQMLKRYTHLRAEDLVNELDSIADRRNRRDES
>Mature_366_residues
ATLVKTPSGTWKAVIRKTGFPTTSKTFRTKRDAEDWSRRTEDEMVRGVYIQRAPAERMTVADALKRYLAEVSPTKRPASA
ACDVRHSKPLIKGLGKYSLAALSPEIIAKYRDERLAGLDRKDAKGNPDPRPRSPNTVRLDLALLGHMFTTAIREWGIGLP
SNPVQNIRRPAPPPGRERRLNQTEEDRLIAAVDSHSNPMLGWIVRLALETGMRSAEITTLRRNQIDLKRRVVRLLETKNT
APRTVPLSSTATAILQEALANPVRPIDTDLVFFGEPGRDGQRRPYNFNKPWLKAKETAGMKELHFHDLRHEAVSRLVEGG
LSDQQVAAISGHKSMQMLKRYTHLRAEDLVNELDSIADRRNRRDES

Specific function: Shufflon-specific DNA recombinase [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=240, Percent_Identity=31.25, Blast_Score=92, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 41423; Mature: 41292

Theoretical pI: Translated: 10.90; Mature: 10.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATLVKTPSGTWKAVIRKTGFPTTSKTFRTKRDAEDWSRRTEDEMVRGVYIQRAPAERMT
CCCEEECCCCHHHHHHHHCCCCCCCHHHHHHCCHHHHHHCCHHHHHHHHHHCCCCHHHHH
VADALKRYLAEVSPTKRPASAACDVRHSKPLIKGLGKYSLAALSPEIIAKYRDERLAGLD
HHHHHHHHHHHCCCCCCCCHHHHCCHHCCHHHHHCCHHHHHHCCHHHHHHHHHHHHHCCC
RKDAKGNPDPRPRSPNTVRLDLALLGHMFTTAIREWGIGLPSNPVQNIRRPAPPPGRERR
CCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCHHHC
LNQTEEDRLIAAVDSHSNPMLGWIVRLALETGMRSAEITTLRRNQIDLKRRVVRLLETKN
CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
TAPRTVPLSSTATAILQEALANPVRPIDTDLVFFGEPGRDGQRRPYNFNKPWLKAKETAG
CCCCEECCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHCC
MKELHFHDLRHEAVSRLVEGGLSDQQVAAISGHKSMQMLKRYTHLRAEDLVNELDSIADR
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RNRRDES
HHCCCCC
>Mature Secondary Structure 
ATLVKTPSGTWKAVIRKTGFPTTSKTFRTKRDAEDWSRRTEDEMVRGVYIQRAPAERMT
CCEEECCCCHHHHHHHHCCCCCCCHHHHHHCCHHHHHHCCHHHHHHHHHHCCCCHHHHH
VADALKRYLAEVSPTKRPASAACDVRHSKPLIKGLGKYSLAALSPEIIAKYRDERLAGLD
HHHHHHHHHHHCCCCCCCCHHHHCCHHCCHHHHHCCHHHHHHCCHHHHHHHHHHHHHCCC
RKDAKGNPDPRPRSPNTVRLDLALLGHMFTTAIREWGIGLPSNPVQNIRRPAPPPGRERR
CCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCHHHC
LNQTEEDRLIAAVDSHSNPMLGWIVRLALETGMRSAEITTLRRNQIDLKRRVVRLLETKN
CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
TAPRTVPLSSTATAILQEALANPVRPIDTDLVFFGEPGRDGQRRPYNFNKPWLKAKETAG
CCCCEECCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHCC
MKELHFHDLRHEAVSRLVEGGLSDQQVAAISGHKSMQMLKRYTHLRAEDLVNELDSIADR
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RNRRDES
HHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3065610; 3029698 [H]