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The map label for this gene is cycM [H]

Identifier: 110636409

GI number: 110636409

Start: 4396789

End: 4397649

Strand: Reverse

Name: cycM [H]

Synonym: Meso_4085

Alternate gene names: 110636409

Gene position: 4397649-4396789 (Counterclockwise)

Preceding gene: 110636418

Following gene: 110636408

Centisome position: 99.66

GC content: 65.74

Gene sequence:

>861_bases
ATGCCCGCGGAGGATACGGAGAAGGGGGCCTTAGGGCACATGGATTCTTTCGAACTCAACAAATTCATCGGCGCATTCCT
CGGCGTTGTTTTCGTGGTATTCTCCATTAGCCTATTGTCCGATGCCGTCTTTTCCTCTCCCGAGCCGGAAACACCCGGTT
ATGCCATCGCGGTACCCGAAGGCGGCGCTACCGAAGGCGGCGGAGAGGCCCAACCGGCTGCCGAATCAGTGCTGCCGCTT
CTTGCCTCTGCCGACGCTTCGGCAGGTGAGGCCGTTTTCAAGCGCTGCGGAGCCTGCCATACGGTCGAGCAGGGCGGCCC
GAACAAGGTGGGCCCCAATCTGTGGAGTGTCGTTGACCGCCCGATCGCGAGTCATGAGGGCTTCAGCTATTCGAGCGCGT
TGACGGAGTTCTCGGAAGGCGGCCAGAAGCTCTGGACTTATGAGAATCTGGACCACTTCCTGGCCAGCCCCAAGGGCCTC
GTTCCGGGCACGGCCATGTCCTTCGCGGGCCTCAGCAAGGTGGAGGATCGGGCCAACCTGATCGCCTATCTGCGCACGAT
GTCGGACCAGCCTGTTCCGCTGCCGGAAGCAGCGCCCGCGGGTGAAGAAGGTGCCGCCGCGCCCGCGGAAGGCGGCGAGC
AGACGCCGCCTGCGGAGGGCGAGGCAGCCCCCCCGGCCGAGGGTGCCGCTCCGGCGGAAGGAACGGCAGCGCCAGCCCAA
GACGGTGCTGCGCCCGCGGAAGGCGCGCCTGCCGGGGATACACAGGCTCCGGCCCAGACGGAAGAAACCACTACGCCCCC
AGCTACGGAAGGCGAAGCTGGCGGCAGCACAGGCGAAACGCAGCCCGCTCCCGCTCAATAG

Upstream 100 bases:

>100_bases
CTTATATGTGTTGCGTTGATCGAGCAAAAGACCTAGTTTCCGCGCGATTTTTGGCAGCAGCCGAACGCGGGAACCCGATG
CGCCGGACGGAAATGGCGCG

Downstream 100 bases:

>100_bases
TTGATCTAAAATATCCCGACGAAAAGCCGGCTTATGCCGGCTTTTTTATTTTTGCCGCGCCCCACCGATTGCCATCAGCC
GCAGATGAACTACCTTCGGC

Product: cytochrome c, class I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 285

Protein sequence:

>286_residues
MPAEDTEKGALGHMDSFELNKFIGAFLGVVFVVFSISLLSDAVFSSPEPETPGYAIAVPEGGATEGGGEAQPAAESVLPL
LASADASAGEAVFKRCGACHTVEQGGPNKVGPNLWSVVDRPIASHEGFSYSSALTEFSEGGQKLWTYENLDHFLASPKGL
VPGTAMSFAGLSKVEDRANLIAYLRTMSDQPVPLPEAAPAGEEGAAAPAEGGEQTPPAEGEAAPPAEGAAPAEGTAAPAQ
DGAAPAEGAPAGDTQAPAQTEETTTPPATEGEAGGSTGETQPAPAQ

Sequences:

>Translated_286_residues
MPAEDTEKGALGHMDSFELNKFIGAFLGVVFVVFSISLLSDAVFSSPEPETPGYAIAVPEGGATEGGGEAQPAAESVLPL
LASADASAGEAVFKRCGACHTVEQGGPNKVGPNLWSVVDRPIASHEGFSYSSALTEFSEGGQKLWTYENLDHFLASPKGL
VPGTAMSFAGLSKVEDRANLIAYLRTMSDQPVPLPEAAPAGEEGAAAPAEGGEQTPPAEGEAAPPAEGAAPAEGTAAPAQ
DGAAPAEGAPAGDTQAPAQTEETTTPPATEGEAGGSTGETQPAPAQ
>Mature_285_residues
PAEDTEKGALGHMDSFELNKFIGAFLGVVFVVFSISLLSDAVFSSPEPETPGYAIAVPEGGATEGGGEAQPAAESVLPLL
ASADASAGEAVFKRCGACHTVEQGGPNKVGPNLWSVVDRPIASHEGFSYSSALTEFSEGGQKLWTYENLDHFLASPKGLV
PGTAMSFAGLSKVEDRANLIAYLRTMSDQPVPLPEAAPAGEEGAAAPAEGGEQTPPAEGEAAPPAEGAAPAEGTAAPAQD
GAAPAEGAPAGDTQAPAQTEETTTPPATEGEAGGSTGETQPAPAQ

Specific function: May be involved in electron transfer from bc1 complex to aa3 [H]

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

Organism=Homo sapiens, GI11128019, Length=107, Percent_Identity=38.3177570093458, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17539604, Length=101, Percent_Identity=40.5940594059406, Blast_Score=78, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17566554, Length=101, Percent_Identity=38.6138613861386, Blast_Score=73, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6322508, Length=101, Percent_Identity=45.5445544554455, Blast_Score=95, Evalue=1e-20,
Organism=Saccharomyces cerevisiae, GI6320796, Length=100, Percent_Identity=43, Blast_Score=92, Evalue=9e-20,
Organism=Drosophila melanogaster, GI17137204, Length=107, Percent_Identity=45.7943925233645, Blast_Score=98, Evalue=7e-21,
Organism=Drosophila melanogaster, GI17137228, Length=103, Percent_Identity=41.747572815534, Blast_Score=87, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 28655; Mature: 28524

Theoretical pI: Translated: 3.83; Mature: 3.83

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAEDTEKGALGHMDSFELNKFIGAFLGVVFVVFSISLLSDAVFSSPEPETPGYAIAVPE
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECC
GGATEGGGEAQPAAESVLPLLASADASAGEAVFKRCGACHTVEQGGPNKVGPNLWSVVDR
CCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHCCCCCCCCCHHHHHHHC
PIASHEGFSYSSALTEFSEGGQKLWTYENLDHFLASPKGLVPGTAMSFAGLSKVEDRANL
HHHHCCCCCHHHHHHHHHHCCCEEECHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
IAYLRTMSDQPVPLPEAAPAGEEGAAAPAEGGEQTPPAEGEAAPPAEGAAPAEGTAAPAQ
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DGAAPAEGAPAGDTQAPAQTEETTTPPATEGEAGGSTGETQPAPAQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PAEDTEKGALGHMDSFELNKFIGAFLGVVFVVFSISLLSDAVFSSPEPETPGYAIAVPE
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECC
GGATEGGGEAQPAAESVLPLLASADASAGEAVFKRCGACHTVEQGGPNKVGPNLWSVVDR
CCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHCCCCCCCCCHHHHHHHC
PIASHEGFSYSSALTEFSEGGQKLWTYENLDHFLASPKGLVPGTAMSFAGLSKVEDRANL
HHHHCCCCCHHHHHHHHHHCCCEEECHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
IAYLRTMSDQPVPLPEAAPAGEEGAAAPAEGGEQTPPAEGEAAPPAEGAAPAEGTAAPAQ
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DGAAPAEGAPAGDTQAPAQTEETTTPPATEGEAGGSTGETQPAPAQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194 [H]