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The map label for this gene is ynjB [H]

Identifier: 110636370

GI number: 110636370

Start: 4355383

End: 4356603

Strand: Reverse

Name: ynjB [H]

Synonym: Meso_4046

Alternate gene names: 110636370

Gene position: 4356603-4355383 (Counterclockwise)

Preceding gene: 110636375

Following gene: 110636369

Centisome position: 98.73

GC content: 61.18

Gene sequence:

>1221_bases
GTGCTGAAACATTTCCTAGCTGCCGCACTCCTTTGCACCGCCAGCCTTCCGGCGCATGCGGAGGATTTCACCGCCGCCGA
CTGGAACAAGGTGCTTGAAGAGGCGCGCGGTCAGACAGTCTATTTCAACGCCTGGGGAGGAGCGCAGAACATCAATGCCT
ATATCGGATGGGCGGCGGGCGAACTTCGGGACCGATACGGCGTCACCTTGAAGCAGGTGAAGCTCGACGACACGGCTCAC
GCGGTGGCAACCGTCCTTGCCGAAAAGACGGCCGGACGCGATGAGGGCGGCTCGGTGGACCTCATCTGGATCAACGGCGA
GAATTTTGCCGCCATGAAAGAGCGCGGACTGCTGCTGTCGCCCGGCTGGGCGCAAGATCTCCCGAACTGGCGCTACGTGG
ACCACGAGAACAAGCCCACCATCACGACTGACTTCACCATTCCCGTCGAAGGACTGGCAAGCCCTTGGGGAATGGCACAG
CTTGCCTTCTTCTACGACGGAGCCCGCATGGACGCGGCGAAGCTTCCTCGCACTGCCGATGAGTTGCTCGCCTGGGCGGA
AGCCAATCCGGGACGCTTTTCCTATCCCCAGCCGCCTGATTTCACCGGCACCTCTTTCCTGAAGCAGGTCCTCTTGGAAA
AGGTGACGGACCGGTCCGTTCTGGATCGGCCGGTGGAGGATGACGTTTTCGCCGAGGTAACAAAGCCGCTCTTCGACTAT
CTCGACACGCTGCACAAAGTTGCGTGGCGAAGCGGGCGGGCCTTCCCACAGAACTATCCCGCCATGAAGCAGCTTCTGGC
AGACGGCGAACTGGATATCATCTTCGCTTTCAACCCTTCGGAAGCTTCGAGCGCGATCGCCAATGGCGAGCTGCCGGATA
CGGTGCGCTCCTTCACCTTCCCCGGCGGCACGCTCGCCAACACGCATTTCGTGGCAATACCGTACAATGCTAATGCCAAG
GCCGGCGCTCTCGTCACGGCGAATTTCCTGCTATCGCCGCAAGCGCAGGCGAGAAAGCAGGACCCGGCCTTTTGGGGCGA
TCCGACCGTGCTGTCCATGGAAAAACTCGATCCCGCCGCGCGCGCAGGTTTTGAGGCAATCGACCTCGGCATCGCGACAC
TGAAACCGGAAGAACTCGGCCCCGCGCTGGGCGAGCCGCATCCAAGCTGGATGGAGCGCATCGAGGAAGAATGGAACCGT
CGCTACACGGCCGAGAATTGA

Upstream 100 bases:

>100_bases
ACCAACAGGGCCGCGCCTCACGGGGTTTTGAGGGCCGCTCCATTGATTCCGAGGCGCGGGCGGTGCTCTATCGCGGGCAA
ACTGGGGAAGAGGAACCGCC

Downstream 100 bases:

>100_bases
GGGTACCCCACCCTCCCCTTTGTGGGGAGGGTGGAAGGTGCTCATGCTGACCCGCCTGGGCCCTGCCCTCGTTATCCTGC
TTTTGACCGGGCCCATTGCC

Product: putative ABC transporter solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 406

Protein sequence:

>406_residues
MLKHFLAAALLCTASLPAHAEDFTAADWNKVLEEARGQTVYFNAWGGAQNINAYIGWAAGELRDRYGVTLKQVKLDDTAH
AVATVLAEKTAGRDEGGSVDLIWINGENFAAMKERGLLLSPGWAQDLPNWRYVDHENKPTITTDFTIPVEGLASPWGMAQ
LAFFYDGARMDAAKLPRTADELLAWAEANPGRFSYPQPPDFTGTSFLKQVLLEKVTDRSVLDRPVEDDVFAEVTKPLFDY
LDTLHKVAWRSGRAFPQNYPAMKQLLADGELDIIFAFNPSEASSAIANGELPDTVRSFTFPGGTLANTHFVAIPYNANAK
AGALVTANFLLSPQAQARKQDPAFWGDPTVLSMEKLDPAARAGFEAIDLGIATLKPEELGPALGEPHPSWMERIEEEWNR
RYTAEN

Sequences:

>Translated_406_residues
MLKHFLAAALLCTASLPAHAEDFTAADWNKVLEEARGQTVYFNAWGGAQNINAYIGWAAGELRDRYGVTLKQVKLDDTAH
AVATVLAEKTAGRDEGGSVDLIWINGENFAAMKERGLLLSPGWAQDLPNWRYVDHENKPTITTDFTIPVEGLASPWGMAQ
LAFFYDGARMDAAKLPRTADELLAWAEANPGRFSYPQPPDFTGTSFLKQVLLEKVTDRSVLDRPVEDDVFAEVTKPLFDY
LDTLHKVAWRSGRAFPQNYPAMKQLLADGELDIIFAFNPSEASSAIANGELPDTVRSFTFPGGTLANTHFVAIPYNANAK
AGALVTANFLLSPQAQARKQDPAFWGDPTVLSMEKLDPAARAGFEAIDLGIATLKPEELGPALGEPHPSWMERIEEEWNR
RYTAEN
>Mature_406_residues
MLKHFLAAALLCTASLPAHAEDFTAADWNKVLEEARGQTVYFNAWGGAQNINAYIGWAAGELRDRYGVTLKQVKLDDTAH
AVATVLAEKTAGRDEGGSVDLIWINGENFAAMKERGLLLSPGWAQDLPNWRYVDHENKPTITTDFTIPVEGLASPWGMAQ
LAFFYDGARMDAAKLPRTADELLAWAEANPGRFSYPQPPDFTGTSFLKQVLLEKVTDRSVLDRPVEDDVFAEVTKPLFDY
LDTLHKVAWRSGRAFPQNYPAMKQLLADGELDIIFAFNPSEASSAIANGELPDTVRSFTFPGGTLANTHFVAIPYNANAK
AGALVTANFLLSPQAQARKQDPAFWGDPTVLSMEKLDPAARAGFEAIDLGIATLKPEELGPALGEPHPSWMERIEEEWNR
RYTAEN

Specific function: Unknown

COG id: COG4134

COG function: function code R; ABC-type uncharacterized transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081966, Length=379, Percent_Identity=48.5488126649077, Blast_Score=336, Evalue=2e-93,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 44687; Mature: 44687

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKHFLAAALLCTASLPAHAEDFTAADWNKVLEEARGQTVYFNAWGGAQNINAYIGWAAG
CHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEECHH
ELRDRYGVTLKQVKLDDTAHAVATVLAEKTAGRDEGGSVDLIWINGENFAAMKERGLLLS
HHHHHHCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEHHHHCCCEEC
PGWAQDLPNWRYVDHENKPTITTDFTIPVEGLASPWGMAQLAFFYDGARMDAAKLPRTAD
CCHHHCCCCCEEECCCCCCEEEEEEEEEHHHCCCCCCHHHHHEEECCCCCCHHHCCCCHH
ELLAWAEANPGRFSYPQPPDFTGTSFLKQVLLEKVTDRSVLDRPVEDDVFAEVTKPLFDY
HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHH
LDTLHKVAWRSGRAFPQNYPAMKQLLADGELDIIFAFNPSEASSAIANGELPDTVRSFTF
HHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEEEECCCHHHHHHCCCCCCHHHHHHCC
PGGTLANTHFVAIPYNANAKAGALVTANFLLSPQAQARKQDPAFWGDPTVLSMEKLDPAA
CCCCCCCCEEEEEECCCCCCCCEEEEEEEEECCCHHHHCCCCCCCCCCCEEEHHHCCHHH
RAGFEAIDLGIATLKPEELGPALGEPHPSWMERIEEEWNRRYTAEN
HCCCCEEECCCEECCHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLKHFLAAALLCTASLPAHAEDFTAADWNKVLEEARGQTVYFNAWGGAQNINAYIGWAAG
CHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEECHH
ELRDRYGVTLKQVKLDDTAHAVATVLAEKTAGRDEGGSVDLIWINGENFAAMKERGLLLS
HHHHHHCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEHHHHCCCEEC
PGWAQDLPNWRYVDHENKPTITTDFTIPVEGLASPWGMAQLAFFYDGARMDAAKLPRTAD
CCHHHCCCCCEEECCCCCCEEEEEEEEEHHHCCCCCCHHHHHEEECCCCCCHHHCCCCHH
ELLAWAEANPGRFSYPQPPDFTGTSFLKQVLLEKVTDRSVLDRPVEDDVFAEVTKPLFDY
HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHH
LDTLHKVAWRSGRAFPQNYPAMKQLLADGELDIIFAFNPSEASSAIANGELPDTVRSFTF
HHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEEEECCCHHHHHHCCCCCCHHHHHHCC
PGGTLANTHFVAIPYNANAKAGALVTANFLLSPQAQARKQDPAFWGDPTVLSMEKLDPAA
CCCCCCCCEEEEEECCCCCCCCEEEEEEEEECCCHHHHCCCCCCCCCCCEEEHHHCCHHH
RAGFEAIDLGIATLKPEELGPALGEPHPSWMERIEEEWNRRYTAEN
HCCCCEEECCCEECCHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 10806384 [H]