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The map label for this gene is ynjC [H]

Identifier: 110636369

GI number: 110636369

Start: 4353660

End: 4355339

Strand: Reverse

Name: ynjC [H]

Synonym: Meso_4045

Alternate gene names: 110636369

Gene position: 4355339-4353660 (Counterclockwise)

Preceding gene: 110636370

Following gene: 110636368

Centisome position: 98.71

GC content: 63.39

Gene sequence:

>1680_bases
ATGCTGACCCGCCTGGGCCCTGCCCTCGTTATCCTGCTTTTGACCGGGCCCATTGCCTTCGGACTGGCCGGGACGGTGCT
GCCTGCATTCGGCTTCCTGCCTGTGCTGGGCGGCATGGAGCTCACGCTCAGGCATTTTCGCGACCTCTTTTCCGAGCCGG
CCATTTTTACGTCGGCGAGCCTAAGTCTCACGATGGGGCTTGCGACCGCTTTCATTTCCCTCCTTACAGTCATGCTTTTC
ATAGCAGGCTACGCGGGCACCCGGGCTATCGGCCGCGTGCAGCACCTGGTCTCCCCACTGCTTTCGCTTCCGCATGCGGC
CGCAGCCTTCGGGCTTGCCTTTCTAATCGCGCCATCGGGGATGCTCGCGCGGCTCATCTCTCCGGAACTCACCGGCTGGC
AAAGGCCGCCAGACCTCCTGATCGTCAACGATCCGATGGGGCTCGCGATGATGGCAGGGCTGATCGTGAAGGAGATTCCC
TTTCTCCTGCTGATGACGCTTGCGGCACTCCCTCAAGCGCCGTTGCCGCAGACGCGGATGCTTGCCGCTTCGCTTGGCTA
TGGGCGCATGGCGGGTTTCCTGCTCGGCCTCTGGCCGGTGATTTACCGGCAGATCCGGCTGCCGGTCTTCGCGGTGATTG
CCTTTGCCTCCTCCGTCGTCGATGTGGGGATCATTCTCGGCCCAACGCGTCCCGCGCCTCTTGCGGTGCGCCTTGTCGAG
TGGATGGACGATCCGGATCTTTCCATGCGCAATCTGGCCAGCGCCGGTGCGCTGCTGCAGCTTGGCGTGACCGGGCTGGC
GCTTGCGCTCTGGCTGGGTCTGGAGCGGCTTGGCGCAGCGCTTTGCACACGCATGGCGATGCATGGGTGGAGGTTTCGAC
GCGATGCGCTCATCCGCGCAGCAGCGCTCGCGGCAATGGTGCTTGCCGCAGCTATTGTTCTCGCTGGGCTTTGCTCGCTT
TTGCTTTGGTCCTTCGCCGGGCTCTGGCAATTTCCCGATGCGCTGCCCTCCTCCTTCACGCTCAGGACCTGGATGCGGAC
CCTTCCCTCCATTTTGGAGCCGCTGCGGATGACGCTGCTTGCCGGTCTTCTCTCAACGCTGATCGCCTCCTTGCTTGCGA
TCCTTTGCCTGATGAATGAGGACGAGACTCGGCGAAGGCCGGGCCGTGGAGCGCTCACCCTGCTTTATCTGCCGCTGCTG
ATACCGCAGGTCGCCTTCGTTTTCGGCCTGCAACTCTTCCTCGTCTATGCAGGCATGCTCGCCACGCTGCCGGCGCTGGT
GCTGGCGCATCTCGTTTTCGTCATGCCCTATGCATATCTGTCGCTGAAGGACCCATGGTATGCCTTCGACCGTCGTTACG
ACCAGATCGCGGCGGGGCTTGGCAAAGGCCGAGCGCGAAGGTTTTTCTCGATCCGCCTGCCCGTCATGCTGCGCGCGGTC
CTCACCACGGCGGCGGTGGGCTTCGCCGTTTCAGTCGGACTTTATCTGCCCACCGTGTTGGTCGGCGCCGGCCGGCTGAC
AACGGTGACAAGCGAGGCGGTGGCGCTCGCTTCGGGCGGCAATGCGCGGGTGATCGGAGCCTATGCCTTCTGGCAGATGT
TTCTGCCCGCGGCCGGCTTTGCCGTTGCAACCTTCATGCCGACACTGATATTCCGGCGCTTCCGCGGCATGCAGGTTTAG

Upstream 100 bases:

>100_bases
AGCTGGATGGAGCGCATCGAGGAAGAATGGAACCGTCGCTACACGGCCGAGAATTGAGGGTACCCCACCCTCCCCTTTGT
GGGGAGGGTGGAAGGTGCTC

Downstream 100 bases:

>100_bases
GAAGACACGTTGAAGGAGAAGGGGCTTTTTCTCGATGGCGTGAAAATCACGCTCGGCGGGCGCACGCTCATCGAACTTTC
GCGCCATGTGCGTCCGGGCG

Product: putative permease ABC transporter protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 559; Mature: 559

Protein sequence:

>559_residues
MLTRLGPALVILLLTGPIAFGLAGTVLPAFGFLPVLGGMELTLRHFRDLFSEPAIFTSASLSLTMGLATAFISLLTVMLF
IAGYAGTRAIGRVQHLVSPLLSLPHAAAAFGLAFLIAPSGMLARLISPELTGWQRPPDLLIVNDPMGLAMMAGLIVKEIP
FLLLMTLAALPQAPLPQTRMLAASLGYGRMAGFLLGLWPVIYRQIRLPVFAVIAFASSVVDVGIILGPTRPAPLAVRLVE
WMDDPDLSMRNLASAGALLQLGVTGLALALWLGLERLGAALCTRMAMHGWRFRRDALIRAAALAAMVLAAAIVLAGLCSL
LLWSFAGLWQFPDALPSSFTLRTWMRTLPSILEPLRMTLLAGLLSTLIASLLAILCLMNEDETRRRPGRGALTLLYLPLL
IPQVAFVFGLQLFLVYAGMLATLPALVLAHLVFVMPYAYLSLKDPWYAFDRRYDQIAAGLGKGRARRFFSIRLPVMLRAV
LTTAAVGFAVSVGLYLPTVLVGAGRLTTVTSEAVALASGGNARVIGAYAFWQMFLPAAGFAVATFMPTLIFRRFRGMQV

Sequences:

>Translated_559_residues
MLTRLGPALVILLLTGPIAFGLAGTVLPAFGFLPVLGGMELTLRHFRDLFSEPAIFTSASLSLTMGLATAFISLLTVMLF
IAGYAGTRAIGRVQHLVSPLLSLPHAAAAFGLAFLIAPSGMLARLISPELTGWQRPPDLLIVNDPMGLAMMAGLIVKEIP
FLLLMTLAALPQAPLPQTRMLAASLGYGRMAGFLLGLWPVIYRQIRLPVFAVIAFASSVVDVGIILGPTRPAPLAVRLVE
WMDDPDLSMRNLASAGALLQLGVTGLALALWLGLERLGAALCTRMAMHGWRFRRDALIRAAALAAMVLAAAIVLAGLCSL
LLWSFAGLWQFPDALPSSFTLRTWMRTLPSILEPLRMTLLAGLLSTLIASLLAILCLMNEDETRRRPGRGALTLLYLPLL
IPQVAFVFGLQLFLVYAGMLATLPALVLAHLVFVMPYAYLSLKDPWYAFDRRYDQIAAGLGKGRARRFFSIRLPVMLRAV
LTTAAVGFAVSVGLYLPTVLVGAGRLTTVTSEAVALASGGNARVIGAYAFWQMFLPAAGFAVATFMPTLIFRRFRGMQV
>Mature_559_residues
MLTRLGPALVILLLTGPIAFGLAGTVLPAFGFLPVLGGMELTLRHFRDLFSEPAIFTSASLSLTMGLATAFISLLTVMLF
IAGYAGTRAIGRVQHLVSPLLSLPHAAAAFGLAFLIAPSGMLARLISPELTGWQRPPDLLIVNDPMGLAMMAGLIVKEIP
FLLLMTLAALPQAPLPQTRMLAASLGYGRMAGFLLGLWPVIYRQIRLPVFAVIAFASSVVDVGIILGPTRPAPLAVRLVE
WMDDPDLSMRNLASAGALLQLGVTGLALALWLGLERLGAALCTRMAMHGWRFRRDALIRAAALAAMVLAAAIVLAGLCSL
LLWSFAGLWQFPDALPSSFTLRTWMRTLPSILEPLRMTLLAGLLSTLIASLLAILCLMNEDETRRRPGRGALTLLYLPLL
IPQVAFVFGLQLFLVYAGMLATLPALVLAHLVFVMPYAYLSLKDPWYAFDRRYDQIAAGLGKGRARRFFSIRLPVMLRAV
LTTAAVGFAVSVGLYLPTVLVGAGRLTTVTSEAVALASGGNARVIGAYAFWQMFLPAAGFAVATFMPTLIFRRFRGMQV

Specific function: Probably part of the binding-protein-dependent transport system ynjCD. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4135

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transmembrane type-1 domains [H]

Homologues:

Organism=Escherichia coli, GI145693149, Length=512, Percent_Identity=32.421875, Blast_Score=145, Evalue=8e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 60124; Mature: 60124

Theoretical pI: Translated: 11.31; Mature: 11.31

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTRLGPALVILLLTGPIAFGLAGTVLPAFGFLPVLGGMELTLRHFRDLFSEPAIFTSAS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEECCH
LSLTMGLATAFISLLTVMLFIAGYAGTRAIGRVQHLVSPLLSLPHAAAAFGLAFLIAPSG
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCH
MLARLISPELTGWQRPPDLLIVNDPMGLAMMAGLIVKEIPFLLLMTLAALPQAPLPQTRM
HHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
LAASLGYGRMAGFLLGLWPVIYRQIRLPVFAVIAFASSVVDVGIILGPTRPAPLAVRLVE
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHH
WMDDPDLSMRNLASAGALLQLGVTGLALALWLGLERLGAALCTRMAMHGWRFRRDALIRA
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AALAAMVLAAAIVLAGLCSLLLWSFAGLWQFPDALPSSFTLRTWMRTLPSILEPLRMTLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
AGLLSTLIASLLAILCLMNEDETRRRPGRGALTLLYLPLLIPQVAFVFGLQLFLVYAGML
HHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATLPALVLAHLVFVMPYAYLSLKDPWYAFDRRYDQIAAGLGKGRARRFFSIRLPVMLRAV
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHEEHHHHHHHHH
LTTAAVGFAVSVGLYLPTVLVGAGRLTTVTSEAVALASGGNARVIGAYAFWQMFLPAAGF
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEECCCCCEEEHHHHHHHHHHHHHHH
AVATFMPTLIFRRFRGMQV
HHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLTRLGPALVILLLTGPIAFGLAGTVLPAFGFLPVLGGMELTLRHFRDLFSEPAIFTSAS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEECCH
LSLTMGLATAFISLLTVMLFIAGYAGTRAIGRVQHLVSPLLSLPHAAAAFGLAFLIAPSG
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCH
MLARLISPELTGWQRPPDLLIVNDPMGLAMMAGLIVKEIPFLLLMTLAALPQAPLPQTRM
HHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
LAASLGYGRMAGFLLGLWPVIYRQIRLPVFAVIAFASSVVDVGIILGPTRPAPLAVRLVE
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHH
WMDDPDLSMRNLASAGALLQLGVTGLALALWLGLERLGAALCTRMAMHGWRFRRDALIRA
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AALAAMVLAAAIVLAGLCSLLLWSFAGLWQFPDALPSSFTLRTWMRTLPSILEPLRMTLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
AGLLSTLIASLLAILCLMNEDETRRRPGRGALTLLYLPLLIPQVAFVFGLQLFLVYAGML
HHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATLPALVLAHLVFVMPYAYLSLKDPWYAFDRRYDQIAAGLGKGRARRFFSIRLPVMLRAV
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHEEHHHHHHHHH
LTTAAVGFAVSVGLYLPTVLVGAGRLTTVTSEAVALASGGNARVIGAYAFWQMFLPAAGF
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEECCCCCEEEHHHHHHHHHHHHHHH
AVATFMPTLIFRRFRGMQV
HHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]