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The map label for this gene is arcB [H]

Identifier: 110636286

GI number: 110636286

Start: 4266147

End: 4267199

Strand: Reverse

Name: arcB [H]

Synonym: Meso_3962

Alternate gene names: 110636286

Gene position: 4267199-4266147 (Counterclockwise)

Preceding gene: 110636287

Following gene: 110636285

Centisome position: 96.71

GC content: 60.68

Gene sequence:

>1053_bases
ATGGATAATTTGAATATCGTCCCCTTTGTCAGCGTCGATCACATGATGACGCTGGTGATGCGCACCGGCGTAGAGCAATT
CCTGACCGAACTTGCCGGCTATATCGAGGAAGACTTCCGCCGCTGGCCGCTCTTCGACAAGACGCCGCGCGTGGCCTGCC
ACAGCCGCGATGGAGTGATTGAGCTGATGCCGACGAGTGACGGCCAGCTCTACGGCTTCAAATATGTAAACGGACATCCG
TGCAACACCCGCGAGGGGCGCCAGACGGTTACAGCCTTCGGCGTCCTTGCCGATGTCGGCAACGGCTATCCGATGCTCCT
GACGGAAATGACCATCCTCACAGCGTTGCGCACGGCGGCCACCTCGGCTCTGGCCGCCAGATATCTTGCGCCACAACACG
CCGACTGCATGGCGATCATCGGCAATGGCGCGCAGTCGGAGTTCCAGGCGCTCGCGTTCAAGGCTCTGCTCGGCATTCGA
AAACTCAGATTGTTCGACCTGGACCCGTCCGCATCGCGCAAATGCGCGGTGAACCTGGCGGGAAAGGGCTTTGATATCAC
CCTCTGCGAGACGGGACAGGAGGCGGTGGAAGAGGCCCAGGTCATAACCACTGTTACGGCTGACAAGCAGCGCGCAGCGA
TTTTGACCGACAATATGGTAGGGCCGGGAGTGCACATAAATGCCGTCGGCGGCGATTGCCCAGGCAAGACCGAGTTGCAC
CGCGACATTCTGCTGCGCTCCGAAATCTTCGTCGAATATACGCCCCAGACCCGCATCGAAGGCGAGATACAGCAGTTGGC
GCCTGATCATGCCGTCACGGAACTGTGGCAGGTTCTAGCGGGCGAAGCAGCGGGCCGTCACGATAACCGGCAGATCACGC
TGTTCGATTCCGTCGGCTTCGCCATCGAAGACTTTTCAGCGCTGCGTTACGTCCGCGACAAGCTGCAATCGACGGGCCTG
TTCGACAGGCTCGACCTGCTCGCCGACCCGGATGAGCCCCGCGATCTCTTCGGGATGCTTCTGCGGCATGCCGCCAGGCA
AACGGCGGCCTAG

Upstream 100 bases:

>100_bases
TTTCTCGATGAACGTGGCCGCACGGCAACCCTGATGGTCGATCTGGCCTCCAGCCTGATGGGACGCCGCATTATGGACCG
GCCGACGCGGAGCTACTCAC

Downstream 100 bases:

>100_bases
GCCCGGCCATCGACGTGGCCGTTACCGCCGCGCCGGCTTGTTGTCGTTGGGCAGGGAGCCCGCCCGGGAGTGACACAGTA
CAAACGCGCCGAACAGATCG

Product: ornithine cyclodeaminase

Products: NA

Alternate protein names: OCD [H]

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MDNLNIVPFVSVDHMMTLVMRTGVEQFLTELAGYIEEDFRRWPLFDKTPRVACHSRDGVIELMPTSDGQLYGFKYVNGHP
CNTREGRQTVTAFGVLADVGNGYPMLLTEMTILTALRTAATSALAARYLAPQHADCMAIIGNGAQSEFQALAFKALLGIR
KLRLFDLDPSASRKCAVNLAGKGFDITLCETGQEAVEEAQVITTVTADKQRAAILTDNMVGPGVHINAVGGDCPGKTELH
RDILLRSEIFVEYTPQTRIEGEIQQLAPDHAVTELWQVLAGEAAGRHDNRQITLFDSVGFAIEDFSALRYVRDKLQSTGL
FDRLDLLADPDEPRDLFGMLLRHAARQTAA

Sequences:

>Translated_350_residues
MDNLNIVPFVSVDHMMTLVMRTGVEQFLTELAGYIEEDFRRWPLFDKTPRVACHSRDGVIELMPTSDGQLYGFKYVNGHP
CNTREGRQTVTAFGVLADVGNGYPMLLTEMTILTALRTAATSALAARYLAPQHADCMAIIGNGAQSEFQALAFKALLGIR
KLRLFDLDPSASRKCAVNLAGKGFDITLCETGQEAVEEAQVITTVTADKQRAAILTDNMVGPGVHINAVGGDCPGKTELH
RDILLRSEIFVEYTPQTRIEGEIQQLAPDHAVTELWQVLAGEAAGRHDNRQITLFDSVGFAIEDFSALRYVRDKLQSTGL
FDRLDLLADPDEPRDLFGMLLRHAARQTAA
>Mature_350_residues
MDNLNIVPFVSVDHMMTLVMRTGVEQFLTELAGYIEEDFRRWPLFDKTPRVACHSRDGVIELMPTSDGQLYGFKYVNGHP
CNTREGRQTVTAFGVLADVGNGYPMLLTEMTILTALRTAATSALAARYLAPQHADCMAIIGNGAQSEFQALAFKALLGIR
KLRLFDLDPSASRKCAVNLAGKGFDITLCETGQEAVEEAQVITTVTADKQRAAILTDNMVGPGVHINAVGGDCPGKTELH
RDILLRSEIFVEYTPQTRIEGEIQQLAPDHAVTELWQVLAGEAAGRHDNRQITLFDSVGFAIEDFSALRYVRDKLQSTGL
FDRLDLLADPDEPRDLFGMLLRHAARQTAA

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI62241008, Length=223, Percent_Identity=29.1479820627803, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI4503065, Length=223, Percent_Identity=29.1479820627803, Blast_Score=92, Evalue=6e-19,
Organism=Drosophila melanogaster, GI24642678, Length=246, Percent_Identity=28.4552845528455, Blast_Score=71, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 38539; Mature: 38539

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNLNIVPFVSVDHMMTLVMRTGVEQFLTELAGYIEEDFRRWPLFDKTPRVACHSRDGVI
CCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCEE
ELMPTSDGQLYGFKYVNGHPCNTREGRQTVTAFGVLADVGNGYPMLLTEMTILTALRTAA
EEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
TSALAARYLAPQHADCMAIIGNGAQSEFQALAFKALLGIRKLRLFDLDPSASRKCAVNLA
HHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCEEEEEEC
GKGFDITLCETGQEAVEEAQVITTVTADKQRAAILTDNMVGPGVHINAVGGDCPGKTELH
CCCEEEEEECCCHHHHHHHHEEEEEECCCCCEEEEECCCCCCCEEEEECCCCCCCCHHHH
RDILLRSEIFVEYTPQTRIEGEIQQLAPDHAVTELWQVLAGEAAGRHDNRQITLFDSVGF
HHHHHHHHEEEEECCCCCCCCHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
AIEDFSALRYVRDKLQSTGLFDRLDLLADPDEPRDLFGMLLRHAARQTAA
HHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDNLNIVPFVSVDHMMTLVMRTGVEQFLTELAGYIEEDFRRWPLFDKTPRVACHSRDGVI
CCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCEE
ELMPTSDGQLYGFKYVNGHPCNTREGRQTVTAFGVLADVGNGYPMLLTEMTILTALRTAA
EEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
TSALAARYLAPQHADCMAIIGNGAQSEFQALAFKALLGIRKLRLFDLDPSASRKCAVNLA
HHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCEEEEEEC
GKGFDITLCETGQEAVEEAQVITTVTADKQRAAILTDNMVGPGVHINAVGGDCPGKTELH
CCCEEEEEECCCHHHHHHHHEEEEEECCCCCEEEEECCCCCCCEEEEECCCCCCCCHHHH
RDILLRSEIFVEYTPQTRIEGEIQQLAPDHAVTELWQVLAGEAAGRHDNRQITLFDSVGF
HHHHHHHHEEEEECCCCCCCCHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
AIEDFSALRYVRDKLQSTGLFDRLDLLADPDEPRDLFGMLLRHAARQTAA
HHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9375792 [H]