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The map label for this gene is yiaN [C]

Identifier: 110636038

GI number: 110636038

Start: 4007329

End: 4008639

Strand: Reverse

Name: yiaN [C]

Synonym: Meso_3713

Alternate gene names: 110636038

Gene position: 4008639-4007329 (Counterclockwise)

Preceding gene: 110636039

Following gene: 110636037

Centisome position: 90.85

GC content: 57.97

Gene sequence:

>1311_bases
ATGGAACCGGAATTCGCAAGAGGTCTCATCATAGTGGCCGTGCTGCTGGTGCTCCTCGGGTCGGGCATCTGGATCTTCGG
GGCAATCTTCCTGATCAGTCTCGGCGGGTTGTTCTTTCTGCAGGATTTCTCGTTCGTTCGTATAGGCACGCTAATGAAAA
CCGTGTCGTGGCGCGCCCTCACCAGCTATGAACTGGCCTCGCTCCCGCTGTTCGTCTGGATGGCCGAGATTCTGTTCCGA
ACGCGACTGTCGGAGCAGATTTTCAGAGGCGTATCGCCCTGGGTGGACTGGGTACCGGGAAGGCTTCTCCACGTGGTTAT
CGTAGCCTGTGGATTGTTCGGAGCCGTTTCCGGTTCATCCACGGCCACGTGCGCGACCGGGTCCAAGATTGCCCTGCCGG
AACTGCGCAAGCGTGGCTACGACGACGGTGTTATCATCGGCGCTCTCTCCGCGGGCGGCACGTTGGGGATTATGATCCCA
CCCTCGATCGCCATGGTGATCTATGCGGTCGTCGCCGAGGTTTCACTTGTCAAGCTGATGCTCGCCGGCTTCCTGCCCGG
ATTGCTGATGATGGGGCTCTTCTCCGGCTACATCTGTGGTTGGTCCGTCCTCAATCCACATCGCACACCAGACGATCCCG
AACCGATGCGACTCATCGAGCGGTTTGCCAGATTATTCGAACTCGCACCAGTTGCCGTGCTGTTCATCTTCATCTTCGGC
GCGTTGTTTGCCGGCTACATCACCGCCACCGAATGCGCGGCGTGGGGAGTGGCGGGCGCCCTCCTGATTGCTGCGCAGCA
GCGCTTGCTGACGTGGGAGACATTCAAGCTCAGCATACGAGGGACGGTTCGTACCACCAGCATGCTTGTCATGCTTATCG
GCATGGCCGCCATCATGTCGTCGTTTGTCGCCCTTGCCGGGATACCCAACGCAATGTCGCGCGCGGTGGACAGTCTGGGC
GTCGGCCCCTTCGGACTGGTGGCGATCCTGATGCTGGTCTTTATCGTGCTGGGCATGTTCCTCGACGGCATGTCCATGAT
TCTTCTGACCTTGCCGGTAACCCTGCCGATGGTCGTCGCCGCTGGCTTCGACCCAATCTGGTACGGGATTTTCCTTATTC
TGATGATTGAGATTGGTGAGCTGACCCCACCCGTGGGCTTCAACCTCTTCGTCCTTCAGAACATTACCGGCAAGAACATA
TTCTCGATCGGCCGGATGTCATTTCCGTTCTTCCTGATGATGGTCATCTGCATCTTCGTTCTGGTGGCGTCCCCGCAAAT
CGTAATGGTTCTGCCCAATCTCTATCACTGA

Upstream 100 bases:

>100_bases
CCTTTTCCTGGTCGAGATGGTTCGCCAGTTCATCATGATTATGATCGGCGGTGAACGCTTCGCGGAATCGATGGCAGAAG
CCACCTAGGGGATTTTTGCC

Downstream 100 bases:

>100_bases
GACCGGAGCAGGACCCAGATCACCAGTGCTGGGCTGACCGCAGCAATTCGAGTGCCGCTGTTTCGGACGGTGAGAATTGC
GTTGCGTTGACGTGATTTGG

Product: TRAP dicarboxylate transporter, DctM subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 436

Protein sequence:

>436_residues
MEPEFARGLIIVAVLLVLLGSGIWIFGAIFLISLGGLFFLQDFSFVRIGTLMKTVSWRALTSYELASLPLFVWMAEILFR
TRLSEQIFRGVSPWVDWVPGRLLHVVIVACGLFGAVSGSSTATCATGSKIALPELRKRGYDDGVIIGALSAGGTLGIMIP
PSIAMVIYAVVAEVSLVKLMLAGFLPGLLMMGLFSGYICGWSVLNPHRTPDDPEPMRLIERFARLFELAPVAVLFIFIFG
ALFAGYITATECAAWGVAGALLIAAQQRLLTWETFKLSIRGTVRTTSMLVMLIGMAAIMSSFVALAGIPNAMSRAVDSLG
VGPFGLVAILMLVFIVLGMFLDGMSMILLTLPVTLPMVVAAGFDPIWYGIFLILMIEIGELTPPVGFNLFVLQNITGKNI
FSIGRMSFPFFLMMVICIFVLVASPQIVMVLPNLYH

Sequences:

>Translated_436_residues
MEPEFARGLIIVAVLLVLLGSGIWIFGAIFLISLGGLFFLQDFSFVRIGTLMKTVSWRALTSYELASLPLFVWMAEILFR
TRLSEQIFRGVSPWVDWVPGRLLHVVIVACGLFGAVSGSSTATCATGSKIALPELRKRGYDDGVIIGALSAGGTLGIMIP
PSIAMVIYAVVAEVSLVKLMLAGFLPGLLMMGLFSGYICGWSVLNPHRTPDDPEPMRLIERFARLFELAPVAVLFIFIFG
ALFAGYITATECAAWGVAGALLIAAQQRLLTWETFKLSIRGTVRTTSMLVMLIGMAAIMSSFVALAGIPNAMSRAVDSLG
VGPFGLVAILMLVFIVLGMFLDGMSMILLTLPVTLPMVVAAGFDPIWYGIFLILMIEIGELTPPVGFNLFVLQNITGKNI
FSIGRMSFPFFLMMVICIFVLVASPQIVMVLPNLYH
>Mature_436_residues
MEPEFARGLIIVAVLLVLLGSGIWIFGAIFLISLGGLFFLQDFSFVRIGTLMKTVSWRALTSYELASLPLFVWMAEILFR
TRLSEQIFRGVSPWVDWVPGRLLHVVIVACGLFGAVSGSSTATCATGSKIALPELRKRGYDDGVIIGALSAGGTLGIMIP
PSIAMVIYAVVAEVSLVKLMLAGFLPGLLMMGLFSGYICGWSVLNPHRTPDDPEPMRLIERFARLFELAPVAVLFIFIFG
ALFAGYITATECAAWGVAGALLIAAQQRLLTWETFKLSIRGTVRTTSMLVMLIGMAAIMSSFVALAGIPNAMSRAVDSLG
VGPFGLVAILMLVFIVLGMFLDGMSMILLTLPVTLPMVVAAGFDPIWYGIFLILMIEIGELTPPVGFNLFVLQNITGKNI
FSIGRMSFPFFLMMVICIFVLVASPQIVMVLPNLYH

Specific function: Unknown

COG id: COG1593

COG function: function code G; TRAP-type C4-dicarboxylate transport system, large permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TRAP transporter large permease family [H]

Homologues:

Organism=Escherichia coli, GI48994950, Length=351, Percent_Identity=29.3447293447293, Blast_Score=102, Evalue=4e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010656
- InterPro:   IPR004681 [H]

Pfam domain/function: PF06808 DctM [H]

EC number: NA

Molecular weight: Translated: 47255; Mature: 47255

Theoretical pI: Translated: 7.86; Mature: 7.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPEFARGLIIVAVLLVLLGSGIWIFGAIFLISLGGLFFLQDFSFVRIGTLMKTVSWRAL
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TSYELASLPLFVWMAEILFRTRLSEQIFRGVSPWVDWVPGRLLHVVIVACGLFGAVSGSS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TATCATGSKIALPELRKRGYDDGVIIGALSAGGTLGIMIPPSIAMVIYAVVAEVSLVKLM
CEEECCCCCCCCHHHHHCCCCCCEEEEEECCCCEEEEEECHHHHHHHHHHHHHHHHHHHH
LAGFLPGLLMMGLFSGYICGWSVLNPHRTPDDPEPMRLIERFARLFELAPVAVLFIFIFG
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALFAGYITATECAAWGVAGALLIAAQQRLLTWETFKLSIRGTVRTTSMLVMLIGMAAIMS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECHHHHHHHHHHHHHHHHHHH
SFVALAGIPNAMSRAVDSLGVGPFGLVAILMLVFIVLGMFLDGMSMILLTLPVTLPMVVA
HHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGFDPIWYGIFLILMIEIGELTPPVGFNLFVLQNITGKNIFSIGRMSFPFFLMMVICIFV
CCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
LVASPQIVMVLPNLYH
HHCCCCEEEECCCCCC
>Mature Secondary Structure
MEPEFARGLIIVAVLLVLLGSGIWIFGAIFLISLGGLFFLQDFSFVRIGTLMKTVSWRAL
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TSYELASLPLFVWMAEILFRTRLSEQIFRGVSPWVDWVPGRLLHVVIVACGLFGAVSGSS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TATCATGSKIALPELRKRGYDDGVIIGALSAGGTLGIMIPPSIAMVIYAVVAEVSLVKLM
CEEECCCCCCCCHHHHHCCCCCCEEEEEECCCCEEEEEECHHHHHHHHHHHHHHHHHHHH
LAGFLPGLLMMGLFSGYICGWSVLNPHRTPDDPEPMRLIERFARLFELAPVAVLFIFIFG
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALFAGYITATECAAWGVAGALLIAAQQRLLTWETFKLSIRGTVRTTSMLVMLIGMAAIMS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECHHHHHHHHHHHHHHHHHHH
SFVALAGIPNAMSRAVDSLGVGPFGLVAILMLVFIVLGMFLDGMSMILLTLPVTLPMVVA
HHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGFDPIWYGIFLILMIEIGELTPPVGFNLFVLQNITGKNIFSIGRMSFPFFLMMVICIFV
CCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
LVASPQIVMVLPNLYH
HHCCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]