Click here to switch to the map view.

The map label for this gene is ygcA [C]

Identifier: 110633094

GI number: 110633094

Start: 811578

End: 812819

Strand: Direct

Name: ygcA [C]

Synonym: Meso_0737

Alternate gene names: 110633094

Gene position: 811578-812819 (Clockwise)

Preceding gene: 110633093

Following gene: 110633098

Centisome position: 18.39

GC content: 67.47

Gene sequence:

>1242_bases
ATGAGCGAGCGGCTCACCATCGTTGAACTGGGCGCGCAAGGCGACGGCATCGCGCACACGCCGGCCGGGCCGGTCTATGT
TCCTTTCGCGCTGCCCGGTGAGGAGGTCACCGCCCGCGTGGAGAAGCAGCGCGCGACGCTGCTGTCGGTGGAAAAGCCGT
CTCCGCTGCGCGTCGAGCCGGCGAGTCCTTATTTTGGCATTTGCGGTGGCTGCTCTGTTCAGCACCTGGCGCCCCTGGCC
TATGCGGAATGGAAGCGGGATAAGGTGGTGCGCGCGCTTCGGAGTCGCGGGCTGGAGGCGGAAGTCGCCCCCCTTGTCCT
GTGTCCACCCGCGTCCCGCCGCCGCGTGACCCTGACGGCGCGCTCGGCGGGCGGCCGCACGCTGCTCGGCTTCAACGCCG
CGCAATCGCACCAGATCGTCGAGATAGAAGAGTGCGCGATCGCCGTCCCGCAGATCGTTGCCGCACTCCCCGATCTGCGC
TTGCTCGTCGGCCTGATCGCGGCGGGATCCAAGCCGTTCCACATCACCGTCACCGCCACCCGCACGGGGCTCGATATCGC
CGCCGAGGAATCGGGCAGGCTGGGCGAGCAGAAACGCCAGAAAGCCCTGCAGTTCGCACTGGCCAAGGGTTTCGCGCGGC
TCTCGGTCGGCGGCGAGGTGCTTGTGGAGCGGGAAAAGCCGGTGGTGATGTTCGGCGACGTGCCGGTGGCCATTCCACCG
GGTGGTTTTCTCCAGGCGACCGAGCAGGCGGAAGAGGCCATGGCGGGCCTCGTGACCGCGCATTTTAAGGGTGCCAAGCA
TGTCGCGGATCTCTTTGCCGGCAGCGGCACGTTTGCGTTGCGACTAGCCCGCCAAGCCCGTGTACACGCGGTAGAAAGTG
AGGGGGCGGCGCTTGCCGCGCTGGAAGATGCAGCCAAGGGCGCCTCGGGCCTGAAGCCGGTCTCCGTGGAACGGCGCGAC
CTGTTCAACCGCCCGATCCTGGCGAAAGAGCTTGCGCAATATGATGGGCTCGTCTTCGACCCCCCTCGGGTCGGCGCGGA
GGCTCAATGCCGGCAGCTTGCCCGCTCGACGGTCAACCGGGTCGCCGCCGTCTCCTGCAATCCCGGCACGCTCGCCCGCG
ATCTCTCGATCCTGGTGGAAGGCGGTTACCGCATAGCGAAGGTCACGCCAATCGACCAGTTCCTCTGGTCGCCGCATGTG
GAGGTGGTGGCGCTGTTGGAGCGGCCTGGTAAGCGAGGCTGA

Upstream 100 bases:

>100_bases
GGCTCAGCATGAATGAAGGGTGGCGGGTGATTGGCCTTGAGCCATCGCCTATCGAAGGCGGCGACGGCGCACGCGAATTC
CTGCTGGCGGGGCGGAAAGA

Downstream 100 bases:

>100_bases
GGCCCCGCTACCAAACCGCTCCCCCCGACCTTAGGAAGCGAGCCGGTGCATTTCCTGCGCTCCCACAGGTTGGTTCAAGG
CGGCACGCCCCGGAAAGAGC

Product: (Uracil-5)-methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 412

Protein sequence:

>413_residues
MSERLTIVELGAQGDGIAHTPAGPVYVPFALPGEEVTARVEKQRATLLSVEKPSPLRVEPASPYFGICGGCSVQHLAPLA
YAEWKRDKVVRALRSRGLEAEVAPLVLCPPASRRRVTLTARSAGGRTLLGFNAAQSHQIVEIEECAIAVPQIVAALPDLR
LLVGLIAAGSKPFHITVTATRTGLDIAAEESGRLGEQKRQKALQFALAKGFARLSVGGEVLVEREKPVVMFGDVPVAIPP
GGFLQATEQAEEAMAGLVTAHFKGAKHVADLFAGSGTFALRLARQARVHAVESEGAALAALEDAAKGASGLKPVSVERRD
LFNRPILAKELAQYDGLVFDPPRVGAEAQCRQLARSTVNRVAAVSCNPGTLARDLSILVEGGYRIAKVTPIDQFLWSPHV
EVVALLERPGKRG

Sequences:

>Translated_413_residues
MSERLTIVELGAQGDGIAHTPAGPVYVPFALPGEEVTARVEKQRATLLSVEKPSPLRVEPASPYFGICGGCSVQHLAPLA
YAEWKRDKVVRALRSRGLEAEVAPLVLCPPASRRRVTLTARSAGGRTLLGFNAAQSHQIVEIEECAIAVPQIVAALPDLR
LLVGLIAAGSKPFHITVTATRTGLDIAAEESGRLGEQKRQKALQFALAKGFARLSVGGEVLVEREKPVVMFGDVPVAIPP
GGFLQATEQAEEAMAGLVTAHFKGAKHVADLFAGSGTFALRLARQARVHAVESEGAALAALEDAAKGASGLKPVSVERRD
LFNRPILAKELAQYDGLVFDPPRVGAEAQCRQLARSTVNRVAAVSCNPGTLARDLSILVEGGYRIAKVTPIDQFLWSPHV
EVVALLERPGKRG
>Mature_412_residues
SERLTIVELGAQGDGIAHTPAGPVYVPFALPGEEVTARVEKQRATLLSVEKPSPLRVEPASPYFGICGGCSVQHLAPLAY
AEWKRDKVVRALRSRGLEAEVAPLVLCPPASRRRVTLTARSAGGRTLLGFNAAQSHQIVEIEECAIAVPQIVAALPDLRL
LVGLIAAGSKPFHITVTATRTGLDIAAEESGRLGEQKRQKALQFALAKGFARLSVGGEVLVEREKPVVMFGDVPVAIPPG
GFLQATEQAEEAMAGLVTAHFKGAKHVADLFAGSGTFALRLARQARVHAVESEGAALAALEDAAKGASGLKPVSVERRDL
FNRPILAKELAQYDGLVFDPPRVGAEAQCRQLARSTVNRVAAVSCNPGTLARDLSILVEGGYRIAKVTPIDQFLWSPHVE
VVALLERPGKRG

Specific function: Could Be A 23s rRNA (Uracil-5-)-Methyltransferase. [C]

COG id: COG2265

COG function: function code J; SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RNA M5U methyltransferase family [H]

Homologues:

Organism=Escherichia coli, GI1789148, Length=421, Percent_Identity=28.978622327791, Blast_Score=145, Evalue=4e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016027
- InterPro:   IPR010280 [H]

Pfam domain/function: PF05958 tRNA_U5-meth_tr [H]

EC number: NA

Molecular weight: Translated: 43855; Mature: 43724

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: PS50926 TRAM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSERLTIVELGAQGDGIAHTPAGPVYVPFALPGEEVTARVEKQRATLLSVEKPSPLRVEP
CCCCEEEEEECCCCCCCEECCCCCEEEEEECCCHHHHHHHHHHHHHEEEECCCCCEEECC
ASPYFGICGGCSVQHLAPLAYAEWKRDKVVRALRSRGLEAEVAPLVLCPPASRRRVTLTA
CCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEEE
RSAGGRTLLGFNAAQSHQIVEIEECAIAVPQIVAALPDLRLLVGLIAAGSKPFHITVTAT
ECCCCEEEEECCCCCCCCEEEHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEEEE
RTGLDIAAEESGRLGEQKRQKALQFALAKGFARLSVGGEVLVEREKPVVMFGDVPVAIPP
ECCCEEEECCCCCCCHHHHHHHHHHHHHHCHHEEECCCEEEEECCCCEEEECCCCEEECC
GGFLQATEQAEEAMAGLVTAHFKGAKHVADLFAGSGTFALRLARQARVHAVESEGAALAA
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHEEHHHHHHHHEEECCCCCEEEE
LEDAAKGASGLKPVSVERRDLFNRPILAKELAQYDGLVFDPPRVGAEAQCRQLARSTVNR
HHHHHCCCCCCCCCCCHHHHHCCCCHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHHH
VAAVSCNPGTLARDLSILVEGGYRIAKVTPIDQFLWSPHVEVVALLERPGKRG
EEEEECCCCCHHHHHEEEEECCEEEEEECCHHHHHHCCCHHHHHHHHCCCCCC
>Mature Secondary Structure 
SERLTIVELGAQGDGIAHTPAGPVYVPFALPGEEVTARVEKQRATLLSVEKPSPLRVEP
CCCEEEEEECCCCCCCEECCCCCEEEEEECCCHHHHHHHHHHHHHEEEECCCCCEEECC
ASPYFGICGGCSVQHLAPLAYAEWKRDKVVRALRSRGLEAEVAPLVLCPPASRRRVTLTA
CCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEEE
RSAGGRTLLGFNAAQSHQIVEIEECAIAVPQIVAALPDLRLLVGLIAAGSKPFHITVTAT
ECCCCEEEEECCCCCCCCEEEHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEEEE
RTGLDIAAEESGRLGEQKRQKALQFALAKGFARLSVGGEVLVEREKPVVMFGDVPVAIPP
ECCCEEEECCCCCCCHHHHHHHHHHHHHHCHHEEECCCEEEEECCCCEEEECCCCEEECC
GGFLQATEQAEEAMAGLVTAHFKGAKHVADLFAGSGTFALRLARQARVHAVESEGAALAA
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHEEHHHHHHHHEEECCCCCEEEE
LEDAAKGASGLKPVSVERRDLFNRPILAKELAQYDGLVFDPPRVGAEAQCRQLARSTVNR
HHHHHCCCCCCCCCCCHHHHHCCCCHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHHH
VAAVSCNPGTLARDLSILVEGGYRIAKVTPIDQFLWSPHVEVVALLERPGKRG
EEEEECCCCCHHHHHEEEEECCEEEEEECCHHHHHHCCCHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11214968 [H]