Click here to switch to the map view.

The map label for this gene is yqxC [H]

Identifier: 110633093

GI number: 110633093

Start: 810823

End: 811581

Strand: Direct

Name: yqxC [H]

Synonym: Meso_0736

Alternate gene names: 110633093

Gene position: 810823-811581 (Clockwise)

Preceding gene: 110633092

Following gene: 110633094

Centisome position: 18.38

GC content: 64.82

Gene sequence:

>759_bases
ATGACTGCCCAAGCCGTCCATGCCCGCCTTCGCCTAGACCAGCTTCTGGTGGAGCGCGGCTTTTTTGAAAGCCGTGCGCG
CGCCCGCGATGCCGTACTGCGCGGTACGGTTCAGGTGGCAGGGCAGACAGTGAAAAAGCCTGGCCAGCTTTTCCCGGCCG
ATGCGCAGATCACGGTCGAGGACCCGGCCCGCCGCTATGTCTCGCGGGCGGCGCTGAAGCTCGTCCATGGGCTGGATGCG
TTCGGCCTCGATCCCCACGGCGCCCTTGCGCTCGACATCGGCTCCTCGACCGGCGGCTTCACGCAGGTGCTTCTGGAGCG
CGGTGCCGCCCATGTGACGGCGATCGACGTGGGCACCGGCCAGATGGACGCGAGGCTGCGAGAGGATCCGCGAGTCGCCT
GCCTCGAAGGCATCAATGCCCGCTACCTAACACTCGGGATGATCGGCGGCCGCAGGCCGAATTTCCTCGTCTCCGATGTC
AGCTTCATCTCGCTGAAACTCGCACTGCCGCCCGCGCTCGAAATGGCGGAGAAGGGCGCTTGGGGCCTTTTCCTCGTTAA
GCCGCAATTCGAGGCGGGGCGCGAGGCGATCGGAAAGGGTGGCTTGTTGCGCGAGCCTGATAAGGCTGAAGAGATTGCCC
GCAATATCGCGGAATGGCTCAGCATGAATGAAGGGTGGCGGGTGATTGGCCTTGAGCCATCGCCTATCGAAGGCGGCGAC
GGCGCACGCGAATTCCTGCTGGCGGGGCGGAAAGAATGA

Upstream 100 bases:

>100_bases
GGGGGCGTGAAGGGGCGCGGCATTTCCGGTTTCGTCCTTATAGATGCATTTAACAGAGCCGACGCTTGCCACGCCGCCCC
TCATCCTTCACTGATCACCC

Downstream 100 bases:

>100_bases
GCGAGCGGCTCACCATCGTTGAACTGGGCGCGCAAGGCGACGGCATCGCGCACACGCCGGCCGGGCCGGTCTATGTTCCT
TTCGCGCTGCCCGGTGAGGA

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MTAQAVHARLRLDQLLVERGFFESRARARDAVLRGTVQVAGQTVKKPGQLFPADAQITVEDPARRYVSRAALKLVHGLDA
FGLDPHGALALDIGSSTGGFTQVLLERGAAHVTAIDVGTGQMDARLREDPRVACLEGINARYLTLGMIGGRRPNFLVSDV
SFISLKLALPPALEMAEKGAWGLFLVKPQFEAGREAIGKGGLLREPDKAEEIARNIAEWLSMNEGWRVIGLEPSPIEGGD
GAREFLLAGRKE

Sequences:

>Translated_252_residues
MTAQAVHARLRLDQLLVERGFFESRARARDAVLRGTVQVAGQTVKKPGQLFPADAQITVEDPARRYVSRAALKLVHGLDA
FGLDPHGALALDIGSSTGGFTQVLLERGAAHVTAIDVGTGQMDARLREDPRVACLEGINARYLTLGMIGGRRPNFLVSDV
SFISLKLALPPALEMAEKGAWGLFLVKPQFEAGREAIGKGGLLREPDKAEEIARNIAEWLSMNEGWRVIGLEPSPIEGGD
GAREFLLAGRKE
>Mature_251_residues
TAQAVHARLRLDQLLVERGFFESRARARDAVLRGTVQVAGQTVKKPGQLFPADAQITVEDPARRYVSRAALKLVHGLDAF
GLDPHGALALDIGSSTGGFTQVLLERGAAHVTAIDVGTGQMDARLREDPRVACLEGINARYLTLGMIGGRRPNFLVSDVS
FISLKLALPPALEMAEKGAWGLFLVKPQFEAGREAIGKGGLLREPDKAEEIARNIAEWLSMNEGWRVIGLEPSPIEGGDG
AREFLLAGRKE

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 27214; Mature: 27082

Theoretical pI: Translated: 7.68; Mature: 7.68

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAQAVHARLRLDQLLVERGFFESRARARDAVLRGTVQVAGQTVKKPGQLFPADAQITVE
CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEC
DPARRYVSRAALKLVHGLDAFGLDPHGALALDIGSSTGGFTQVLLERGAAHVTAIDVGTG
CHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCEEEEEECCCC
QMDARLREDPRVACLEGINARYLTLGMIGGRRPNFLVSDVSFISLKLALPPALEMAEKGA
CCCHHHCCCCCEEECCCCCCEEEEEEECCCCCCCEEEECCEEEEEEECCCHHHHHHCCCC
WGLFLVKPQFEAGREAIGKGGLLREPDKAEEIARNIAEWLSMNEGWRVIGLEPSPIEGGD
CEEEEECCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCC
GAREFLLAGRKE
CHHHHHHCCCCC
>Mature Secondary Structure 
TAQAVHARLRLDQLLVERGFFESRARARDAVLRGTVQVAGQTVKKPGQLFPADAQITVE
CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEC
DPARRYVSRAALKLVHGLDAFGLDPHGALALDIGSSTGGFTQVLLERGAAHVTAIDVGTG
CHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCEEEEEECCCC
QMDARLREDPRVACLEGINARYLTLGMIGGRRPNFLVSDVSFISLKLALPPALEMAEKGA
CCCHHHCCCCCEEECCCCCCEEEEEEECCCCCCCEEEECCEEEEEEECCCHHHHHHCCCC
WGLFLVKPQFEAGREAIGKGGLLREPDKAEEIARNIAEWLSMNEGWRVIGLEPSPIEGGD
CEEEEECCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCC
GAREFLLAGRKE
CHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]