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The map label for this gene is xseB [H]

Identifier: 110633090

GI number: 110633090

Start: 807391

End: 807657

Strand: Direct

Name: xseB [H]

Synonym: Meso_0733

Alternate gene names: 110633090

Gene position: 807391-807657 (Clockwise)

Preceding gene: 110633089

Following gene: 110633091

Centisome position: 18.3

GC content: 61.05

Gene sequence:

>267_bases
ATGACAACCGGAAACGACACCGCCGGGACGAATGACGACATCAAGGCCATGAGCTTCGAGCAGGCGCTGGAGGCACTTGA
AAGCATCGTGAACGACCTGGAGCGGGGCGATGTGCCTCTGGAGCAATCGATCCGCATTTATGAGCGTGGAGAGGCTTTGA
AGGCCCATTGCGACCGGCTGCTGAAAGCGGCCGAGGACAAGGTGGAAAAAATCCGGCTGTCCCGCGAAGGGGCGCCGGTC
GGCACCGAGCCGCTTGACCCCAAGTGA

Upstream 100 bases:

>100_bases
GTCCAACCGGCTTGTCAGCCTGCTGGAAGGCGGCTACGACCTGGAAGGGCTGGGCCTATCGGTAGCCGCTCATGTGGGAC
GCTTGATGAAAGGGTAAAGC

Downstream 100 bases:

>100_bases
TCTTGATTCTCTGAAAAGTGGCTGTTCCGCTCCCCGGAAGAGGTCTAAGCTCCGCTGGCTCCCGGCGCGAGGTGTGTCCA
TGAGTTTCTTTCCCGGCAGG

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit [H]

Number of amino acids: Translated: 88; Mature: 87

Protein sequence:

>88_residues
MTTGNDTAGTNDDIKAMSFEQALEALESIVNDLERGDVPLEQSIRIYERGEALKAHCDRLLKAAEDKVEKIRLSREGAPV
GTEPLDPK

Sequences:

>Translated_88_residues
MTTGNDTAGTNDDIKAMSFEQALEALESIVNDLERGDVPLEQSIRIYERGEALKAHCDRLLKAAEDKVEKIRLSREGAPV
GTEPLDPK
>Mature_87_residues
TTGNDTAGTNDDIKAMSFEQALEALESIVNDLERGDVPLEQSIRIYERGEALKAHCDRLLKAAEDKVEKIRLSREGAPVG
TEPLDPK

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003761
- ProDom:   PD028235 [H]

Pfam domain/function: PF02609 Exonuc_VII_S [H]

EC number: =3.1.11.6 [H]

Molecular weight: Translated: 9682; Mature: 9551

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTGNDTAGTNDDIKAMSFEQALEALESIVNDLERGDVPLEQSIRIYERGEALKAHCDRL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHH
LKAAEDKVEKIRLSREGAPVGTEPLDPK
HHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
TTGNDTAGTNDDIKAMSFEQALEALESIVNDLERGDVPLEQSIRIYERGEALKAHCDRL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHH
LKAAEDKVEKIRLSREGAPVGTEPLDPK
HHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968 [H]