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The map label for this gene is agmR [H]

Identifier: 110632953

GI number: 110632953

Start: 669368

End: 670054

Strand: Direct

Name: agmR [H]

Synonym: Meso_0596

Alternate gene names: 110632953

Gene position: 669368-670054 (Clockwise)

Preceding gene: 110632952

Following gene: 110632954

Centisome position: 15.17

GC content: 63.32

Gene sequence:

>687_bases
ATGGCCGGTCACGGCGATCGCGTCGCCTTGATCGCGGACGACGATGAGTTCTTCAGGATTGCCCTGCGCACGATTCTGAA
GGGCGAGCTCGGTTTCGCCGAGGTGATTGAGGCGGGATCGCTCGACGAGGCGATCGAGCGGCTTGCCGAGCGTGACGAGA
TCGGGCTGGCTCTCTTCGATCTGGCAATGCCTGGCATGAAGGATGCCGGAAGCCTTGAAGCGGTCCGCGATTTCCGCCGC
GAAATGCGTGTTGCCGTCGTCTCGGCCTCGACCAGAAGGGCGGATATGCTGGCGGCATTGTCGGCCGGAGTCCACGGTTA
CGTGCCAAAGGGGCTTGGAGCTACGGAGCTTGCCGCTGCACTCGGCCATGTGTTGAACGGAGCAATCTACGTTCCACCGG
AGATCGCGGGGCGAGATGAACGTTCATCGCAGGCCGTGTCTTCCGAACCGTCTTCGGAAAAGCCGGGCCGTGGCGTCGAA
CACCTGACGCCCCGCCAGCGAGAGGTGCTCGCCCTCCTGGTGGACGGCCTCTCCAATAAGGAGATTGCGCGCAAGCTTCG
CCTCGGCGAGGGAACGGTCAAGATCCATATGGCGGCCCTCTTTCGCAGCCTGGGCGTAAGGAACAGGCAGGCTGCGGCTG
CCGCCGGGGTGCGGCTCATGTCGAACCCACGGAAAGATACCGATTGA

Upstream 100 bases:

>100_bases
TAGTGCTTTTTCTGAAGGAGGAGCAGAGGATGCGGGTAACAGGACGAAATTTTCTTCTTCTTCTGGGCGAAGAAAAGATA
TTCTTTGGGGACGGGACGTG

Downstream 100 bases:

>100_bases
GGTCTGATCCTCGCCCCGGCTTTGAATAGGCCATCTGGCCGAATAGGCGACACTGGCGAAAAAGTGCAGGTATCCAGCCA
AAGGAAACGCATATGCAATC

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MAGHGDRVALIADDDEFFRIALRTILKGELGFAEVIEAGSLDEAIERLAERDEIGLALFDLAMPGMKDAGSLEAVRDFRR
EMRVAVVSASTRRADMLAALSAGVHGYVPKGLGATELAAALGHVLNGAIYVPPEIAGRDERSSQAVSSEPSSEKPGRGVE
HLTPRQREVLALLVDGLSNKEIARKLRLGEGTVKIHMAALFRSLGVRNRQAAAAAGVRLMSNPRKDTD

Sequences:

>Translated_228_residues
MAGHGDRVALIADDDEFFRIALRTILKGELGFAEVIEAGSLDEAIERLAERDEIGLALFDLAMPGMKDAGSLEAVRDFRR
EMRVAVVSASTRRADMLAALSAGVHGYVPKGLGATELAAALGHVLNGAIYVPPEIAGRDERSSQAVSSEPSSEKPGRGVE
HLTPRQREVLALLVDGLSNKEIARKLRLGEGTVKIHMAALFRSLGVRNRQAAAAAGVRLMSNPRKDTD
>Mature_227_residues
AGHGDRVALIADDDEFFRIALRTILKGELGFAEVIEAGSLDEAIERLAERDEIGLALFDLAMPGMKDAGSLEAVRDFRRE
MRVAVVSASTRRADMLAALSAGVHGYVPKGLGATELAAALGHVLNGAIYVPPEIAGRDERSSQAVSSEPSSEKPGRGVEH
LTPRQREVLALLVDGLSNKEIARKLRLGEGTVKIHMAALFRSLGVRNRQAAAAAGVRLMSNPRKDTD

Specific function: Positive activator for glycerol metabolism [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=204, Percent_Identity=34.3137254901961, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787473, Length=201, Percent_Identity=31.8407960199005, Blast_Score=77, Evalue=6e-16,
Organism=Escherichia coli, GI1790102, Length=201, Percent_Identity=32.3383084577114, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786747, Length=199, Percent_Identity=25.6281407035176, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1789937, Length=133, Percent_Identity=30.8270676691729, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 24388; Mature: 24257

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGHGDRVALIADDDEFFRIALRTILKGELGFAEVIEAGSLDEAIERLAERDEIGLALFD
CCCCCCEEEEEECCHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHCCHHHHH
LAMPGMKDAGSLEAVRDFRREMRVAVVSASTRRADMLAALSAGVHGYVPKGLGATELAAA
HHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
LGHVLNGAIYVPPEIAGRDERSSQAVSSEPSSEKPGRGVEHLTPRQREVLALLVDGLSNK
HHHHHCCCEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHCCCHHHHHHHHHHHCCCCH
EIARKLRLGEGTVKIHMAALFRSLGVRNRQAAAAAGVRLMSNPRKDTD
HHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
AGHGDRVALIADDDEFFRIALRTILKGELGFAEVIEAGSLDEAIERLAERDEIGLALFD
CCCCCEEEEEECCHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHCCHHHHH
LAMPGMKDAGSLEAVRDFRREMRVAVVSASTRRADMLAALSAGVHGYVPKGLGATELAAA
HHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
LGHVLNGAIYVPPEIAGRDERSSQAVSSEPSSEKPGRGVEHLTPRQREVLALLVDGLSNK
HHHHHCCCEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHCCCHHHHHHHHHHHCCCCH
EIARKLRLGEGTVKIHMAALFRSLGVRNRQAAAAAGVRLMSNPRKDTD
HHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]