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The map label for this gene is intZ [H]

Identifier: 110632914

GI number: 110632914

Start: 613377

End: 614201

Strand: Direct

Name: intZ [H]

Synonym: Meso_0554

Alternate gene names: 110632914

Gene position: 613377-614201 (Clockwise)

Preceding gene: 110632913

Following gene: 110632927

Centisome position: 13.9

GC content: 60.85

Gene sequence:

>825_bases
ATGCTGACGGATGCCGCGCTCCAGGCGCTAAAACCAAAAGACAAAATATACAAGGTCGCGGATCGCGACGGCATGTATGT
CTGCGTCATGCCATCAGGAGCCACATCTTTCCGGCTGGAATACCGGCTGCATGGCCGACGGGAAACGGTCTATCTCGGCA
AGTATGGGCGTGATGGCATCTCTCTCGCGCGGGCGCGGGAGCTGTGCCTGGATGCAAGGCGGGCGATCAGAGAGGGACGT
TCACCGGCGATCGAGAAGCAGCGCGAGAAGCGCCGCCTGAAGGAGGCCAAGAGCTTCGGCGAGTTCGGCGAGAAATGGCT
GGTGAATGCCCCGATGGCAGACAGCACCAGAGCATGCGCGCGCGCCATCTTCGAGCGTGAGCTGCTCCCTGTCTGGCGCA
ATCGCCTTTACGGAAATCACGCCGGACGATCTGCGAGCGCACTGTGCCAAGATCGTCGAGCGCGGCGCCCCGGCCACAGC
GATCCATGTTCGGGACATCCTGAAGCAGATCTACGGCTTCGGATTCTGCATGGAGAGAAGGTGCCCAACCCAGCGGATGA
GGTTGGACCCGCCGCGATCGCGATGTTCGCGCCGAGGGATCGGGCGCTCTCCCCGACCGAAATCCGGATCATGCTGAGGC
AGCTTGAGCATGTACCGACGCTGCCGACCATTCGGCTGTGTATGAAATTGTTCCTGCTGACAATGGTGCGAAAGAGCGAA
CTCCAGGATGCGGTCTGGGACGAGGTGGATTTTGAGAATGCTGTCTGGACGATACCGAAGGAGAGGATGAAGCGGTCGAC
AGCCCAGGCGACTGCCGGCATGTAG

Upstream 100 bases:

>100_bases
GGTACTTTCTATGGCTTAAGCCATTGTAAGAATGCGCATGTTTTAGGCGCGAGCCTCCCAAAAACCCGCGTTACGGTAGT
TTTTCGGAGGTGATACGGCA

Downstream 100 bases:

>100_bases
GGGGCTTTCGCCGAAGCGCAGTCGATAAGGTAAGTGCGGCGATCCGTGGTGATGACGAGGTTGATGGTGATGTCGGTGCG
GGTCGGCTTGACCAGCACAT

Product: CP4-like integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MLTDAALQALKPKDKIYKVADRDGMYVCVMPSGATSFRLEYRLHGRRETVYLGKYGRDGISLARARELCLDARRAIREGR
SPAIEKQREKRRLKEAKSFGEFGEKWLVNAPMADSTRACARAIFERELLPVWRNRLYGNHAGRSASALCQDRRARRPGHS
DPCSGHPEADLRLRILHGEKVPNPADEVGPAAIAMFAPRDRALSPTEIRIMLRQLEHVPTLPTIRLCMKLFLLTMVRKSE
LQDAVWDEVDFENAVWTIPKERMKRSTAQATAGM

Sequences:

>Translated_274_residues
MLTDAALQALKPKDKIYKVADRDGMYVCVMPSGATSFRLEYRLHGRRETVYLGKYGRDGISLARARELCLDARRAIREGR
SPAIEKQREKRRLKEAKSFGEFGEKWLVNAPMADSTRACARAIFERELLPVWRNRLYGNHAGRSASALCQDRRARRPGHS
DPCSGHPEADLRLRILHGEKVPNPADEVGPAAIAMFAPRDRALSPTEIRIMLRQLEHVPTLPTIRLCMKLFLLTMVRKSE
LQDAVWDEVDFENAVWTIPKERMKRSTAQATAGM
>Mature_274_residues
MLTDAALQALKPKDKIYKVADRDGMYVCVMPSGATSFRLEYRLHGRRETVYLGKYGRDGISLARARELCLDARRAIREGR
SPAIEKQREKRRLKEAKSFGEFGEKWLVNAPMADSTRACARAIFERELLPVWRNRLYGNHAGRSASALCQDRRARRPGHS
DPCSGHPEADLRLRILHGEKVPNPADEVGPAAIAMFAPRDRALSPTEIRIMLRQLEHVPTLPTIRLCMKLFLLTMVRKSE
LQDAVWDEVDFENAVWTIPKERMKRSTAQATAGM

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI145693166, Length=269, Percent_Identity=25.6505576208178, Blast_Score=81, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 31137; Mature: 31137

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTDAALQALKPKDKIYKVADRDGMYVCVMPSGATSFRLEYRLHGRRETVYLGKYGRDGI
CCCHHHHHHHCCHHHHEEEECCCCEEEEEECCCCCEEEEEEEECCCEEEEEEECCCCCHH
SLARARELCLDARRAIREGRSPAIEKQREKRRLKEAKSFGEFGEKWLVNAPMADSTRACA
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHH
RAIFERELLPVWRNRLYGNHAGRSASALCQDRRARRPGHSDPCSGHPEADLRLRILHGEK
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCC
VPNPADEVGPAAIAMFAPRDRALSPTEIRIMLRQLEHVPTLPTIRLCMKLFLLTMVRKSE
CCCCHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
LQDAVWDEVDFENAVWTIPKERMKRSTAQATAGM
HHHHHHHHCCCCCCEEECCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLTDAALQALKPKDKIYKVADRDGMYVCVMPSGATSFRLEYRLHGRRETVYLGKYGRDGI
CCCHHHHHHHCCHHHHEEEECCCCEEEEEECCCCCEEEEEEEECCCEEEEEEECCCCCHH
SLARARELCLDARRAIREGRSPAIEKQREKRRLKEAKSFGEFGEKWLVNAPMADSTRACA
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHH
RAIFERELLPVWRNRLYGNHAGRSASALCQDRRARRPGHSDPCSGHPEADLRLRILHGEK
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCC
VPNPADEVGPAAIAMFAPRDRALSPTEIRIMLRQLEHVPTLPTIRLCMKLFLLTMVRKSE
CCCCHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
LQDAVWDEVDFENAVWTIPKERMKRSTAQATAGM
HHHHHHHHCCCCCCEEECCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]