| Definition | Mesorhizobium sp. BNC1, complete genome. |
|---|---|
| Accession | NC_008254 |
| Length | 4,412,446 |
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The map label for this gene is oppD [H]
Identifier: 110632823
GI number: 110632823
Start: 509852
End: 510658
Strand: Direct
Name: oppD [H]
Synonym: Meso_0462
Alternate gene names: 110632823
Gene position: 509852-510658 (Clockwise)
Preceding gene: 110632822
Following gene: 110632824
Centisome position: 11.55
GC content: 64.68
Gene sequence:
>807_bases ATGAGCCTGCTTGTGATCGAAGGGCTCACGCTGGAAAGCAGCGGGCAGAACCTGGTTTCCAATCTCTCGCTCGCGGTGGG GCCAGGCGCGCGCCTGGGGCTGATCGGGGAATCCGGCTCCGGCAAATCATTGACGGCGCTTGCCGCGATTGGCCTCCTGC CGCCGGACATCAGCGTCAAAGGTTCGGTCCGCCTCGACGGCAAGGAGGTGGTCGGTGCACGGGAGGAAGAGCTTGTGCCG CTGCGCGGGGCGGTGGCCGCGACGGTTTTCCAGGAGCCGCTCACCGCGCTCGACCCTTTGATGAAGGTGGGCCGTCAGGT GGCCGAGCCGCTCGTCCGACGCTATCGCCGCGAGGGGAGGGCGCTCGATCGGAAGGCGGTTGCCCGCGAGGTGCGCTCCC TTCTGGAACGGGTTTCACTGCCTGACATCGATCGCATAATGAACGCCTATCCTTACGAAATCTCAGGCGGACAGCGCCAG CGCGTGGCGATCGCCATGGCGCTTGCCTGCCGTCCCAAACTCCTCATCGCGGATGAGCCCACGACGGCCTTGGACGTCAC CACCCAGGCCGAGATTCTCGAGCTTTTGTCGGATCTCGTTCGGGAGAACGGGATGGCGCTGCTCTTCATCAGCCATGATC TGCCGGTCGTTGCACGCGTGGTAGAGGAGGTGGCGGTGTTGCGCCGTGGCGAACTGGTCGAGCAGGGGCCGGTGAAAACG GTTTTCTCTGCGCCGTCGCATGATTACACGAAGACGCTCGTTTCGGCCGCCGCCGCGTTTGATCAGGCACTGGAGCCCAT CCGATGA
Upstream 100 bases:
>100_bases CAGTCGCGCCGGGCCTCGCGCTGGTCTCGCTGGTGATCGGCATGAACCTCCTCGCCGATGGCCTGCGCGACATAGGCGAT CCGACACGGAGGCGCGCGCG
Downstream 100 bases:
>100_bases GCCTGATCTCTTTTGATGCGGTCTCCTTTGGCTATTCCAGCCAGCAGCAGGTGCTGCATGATGTCTCGTTTAAGATTGAG GCGGGTGTGAATGTCGGATT
Product: ABC transporter related
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 268; Mature: 267
Protein sequence:
>268_residues MSLLVIEGLTLESSGQNLVSNLSLAVGPGARLGLIGESGSGKSLTALAAIGLLPPDISVKGSVRLDGKEVVGAREEELVP LRGAVAATVFQEPLTALDPLMKVGRQVAEPLVRRYRREGRALDRKAVAREVRSLLERVSLPDIDRIMNAYPYEISGGQRQ RVAIAMALACRPKLLIADEPTTALDVTTQAEILELLSDLVRENGMALLFISHDLPVVARVVEEVAVLRRGELVEQGPVKT VFSAPSHDYTKTLVSAAAAFDQALEPIR
Sequences:
>Translated_268_residues MSLLVIEGLTLESSGQNLVSNLSLAVGPGARLGLIGESGSGKSLTALAAIGLLPPDISVKGSVRLDGKEVVGAREEELVP LRGAVAATVFQEPLTALDPLMKVGRQVAEPLVRRYRREGRALDRKAVAREVRSLLERVSLPDIDRIMNAYPYEISGGQRQ RVAIAMALACRPKLLIADEPTTALDVTTQAEILELLSDLVRENGMALLFISHDLPVVARVVEEVAVLRRGELVEQGPVKT VFSAPSHDYTKTLVSAAAAFDQALEPIR >Mature_267_residues SLLVIEGLTLESSGQNLVSNLSLAVGPGARLGLIGESGSGKSLTALAAIGLLPPDISVKGSVRLDGKEVVGAREEELVPL RGAVAATVFQEPLTALDPLMKVGRQVAEPLVRRYRREGRALDRKAVAREVRSLLERVSLPDIDRIMNAYPYEISGGQRQR VAIAMALACRPKLLIADEPTTALDVTTQAEILELLSDLVRENGMALLFISHDLPVVARVVEEVAVLRRGELVEQGPVKTV FSAPSHDYTKTLVSAAAAFDQALEPIR
Specific function: Part of the binding-protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI9961250, Length=221, Percent_Identity=32.579185520362, Blast_Score=85, Evalue=7e-17, Organism=Homo sapiens, GI4505771, Length=221, Percent_Identity=32.579185520362, Blast_Score=85, Evalue=7e-17, Organism=Homo sapiens, GI9961252, Length=221, Percent_Identity=32.579185520362, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI42741659, Length=222, Percent_Identity=32.4324324324324, Blast_Score=78, Evalue=9e-15, Organism=Homo sapiens, GI171184400, Length=237, Percent_Identity=29.1139240506329, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI11967969, Length=226, Percent_Identity=28.7610619469027, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI148612844, Length=221, Percent_Identity=31.6742081447964, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI156105685, Length=223, Percent_Identity=29.5964125560538, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI21536378, Length=223, Percent_Identity=28.2511210762332, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI116734710, Length=214, Percent_Identity=26.6355140186916, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI255708477, Length=223, Percent_Identity=31.390134529148, Blast_Score=67, Evalue=1e-11, Organism=Escherichia coli, GI48994883, Length=243, Percent_Identity=44.0329218106996, Blast_Score=204, Evalue=4e-54, Organism=Escherichia coli, GI1787759, Length=265, Percent_Identity=43.7735849056604, Blast_Score=202, Evalue=2e-53, Organism=Escherichia coli, GI1788506, Length=266, Percent_Identity=41.3533834586466, Blast_Score=200, Evalue=8e-53, Organism=Escherichia coli, GI145693107, Length=248, Percent_Identity=44.3548387096774, Blast_Score=199, Evalue=2e-52, Organism=Escherichia coli, GI1789963, Length=275, Percent_Identity=41.0909090909091, Blast_Score=193, Evalue=1e-50, Organism=Escherichia coli, GI1787500, Length=247, Percent_Identity=41.2955465587045, Blast_Score=175, Evalue=3e-45, Organism=Escherichia coli, GI1789890, Length=248, Percent_Identity=40.3225806451613, Blast_Score=170, Evalue=7e-44, Organism=Escherichia coli, GI1787548, Length=270, Percent_Identity=37.4074074074074, Blast_Score=165, Evalue=4e-42, Organism=Escherichia coli, GI1787758, Length=253, Percent_Identity=33.596837944664, Blast_Score=143, Evalue=1e-35, Organism=Escherichia coli, GI1789962, Length=242, Percent_Identity=36.3636363636364, Blast_Score=138, Evalue=5e-34, Organism=Escherichia coli, GI1786398, Length=243, Percent_Identity=39.5061728395062, Blast_Score=136, Evalue=1e-33, Organism=Escherichia coli, GI48994997, Length=259, Percent_Identity=33.976833976834, Blast_Score=118, Evalue=5e-28, Organism=Escherichia coli, GI1789891, Length=255, Percent_Identity=32.9411764705882, Blast_Score=113, Evalue=1e-26, Organism=Escherichia coli, GI1786803, Length=238, Percent_Identity=32.3529411764706, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1787547, Length=247, Percent_Identity=28.7449392712551, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1789032, Length=249, Percent_Identity=32.9317269076305, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1788225, Length=259, Percent_Identity=32.046332046332, Blast_Score=100, Evalue=7e-23, Organism=Escherichia coli, GI1789672, Length=256, Percent_Identity=32.03125, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI87081791, Length=263, Percent_Identity=28.8973384030418, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1786872, Length=221, Percent_Identity=34.3891402714932, Blast_Score=98, Evalue=5e-22, Organism=Escherichia coli, GI87081834, Length=217, Percent_Identity=33.6405529953917, Blast_Score=97, Evalue=9e-22, Organism=Escherichia coli, GI1787029, Length=234, Percent_Identity=32.4786324786325, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1788450, Length=240, Percent_Identity=29.5833333333333, Blast_Score=96, Evalue=4e-21, Organism=Escherichia coli, GI1786703, Length=219, Percent_Identity=35.6164383561644, Blast_Score=94, Evalue=7e-21, Organism=Escherichia coli, GI1787370, Length=259, Percent_Identity=26.2548262548263, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1790162, Length=263, Percent_Identity=26.615969581749, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1787105, Length=220, Percent_Identity=33.1818181818182, Blast_Score=91, Evalue=8e-20, Organism=Escherichia coli, GI1788761, Length=232, Percent_Identity=32.3275862068966, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI1787089, Length=254, Percent_Identity=31.1023622047244, Blast_Score=87, Evalue=8e-19, Organism=Escherichia coli, GI1786345, Length=237, Percent_Identity=32.0675105485232, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1788165, Length=228, Percent_Identity=31.140350877193, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI87081709, Length=261, Percent_Identity=24.904214559387, Blast_Score=85, Evalue=4e-18, Organism=Escherichia coli, GI1786563, Length=229, Percent_Identity=31.8777292576419, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1787712, Length=245, Percent_Identity=30.6122448979592, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1786253, Length=231, Percent_Identity=30.3030303030303, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1788472, Length=239, Percent_Identity=28.0334728033473, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1789991, Length=224, Percent_Identity=27.6785714285714, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1790190, Length=221, Percent_Identity=29.8642533936652, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1789593, Length=245, Percent_Identity=27.3469387755102, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1789873, Length=218, Percent_Identity=29.8165137614679, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1788644, Length=103, Percent_Identity=36.8932038834951, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1786654, Length=248, Percent_Identity=29.4354838709677, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1790525, Length=239, Percent_Identity=26.3598326359833, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI48995001, Length=242, Percent_Identity=30.1652892561983, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1787041, Length=247, Percent_Identity=29.9595141700405, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1787164, Length=89, Percent_Identity=43.8202247191011, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1790739, Length=256, Percent_Identity=28.125, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI1790544, Length=250, Percent_Identity=27.6, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI1787143, Length=217, Percent_Identity=31.7972350230415, Blast_Score=71, Evalue=9e-14, Organism=Escherichia coli, GI1789864, Length=256, Percent_Identity=24.609375, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI87082267, Length=259, Percent_Identity=25.8687258687259, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1786698, Length=196, Percent_Identity=27.5510204081633, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1787112, Length=234, Percent_Identity=27.3504273504274, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1789586, Length=244, Percent_Identity=27.8688524590164, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1788053, Length=212, Percent_Identity=28.3018867924528, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI2367384, Length=230, Percent_Identity=30.8695652173913, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1787792, Length=227, Percent_Identity=29.5154185022026, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1790534, Length=193, Percent_Identity=30.5699481865285, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1789751, Length=249, Percent_Identity=25.3012048192771, Blast_Score=61, Evalue=9e-11, Organism=Caenorhabditis elegans, GI115533592, Length=251, Percent_Identity=27.4900398406374, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI115534520, Length=235, Percent_Identity=30.2127659574468, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI193209708, Length=223, Percent_Identity=32.2869955156951, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI71983516, Length=254, Percent_Identity=28.3464566929134, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71983510, Length=254, Percent_Identity=28.3464566929134, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71983523, Length=254, Percent_Identity=28.3464566929134, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17558664, Length=228, Percent_Identity=28.9473684210526, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17541710, Length=246, Percent_Identity=30.4878048780488, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI71996809, Length=221, Percent_Identity=30.316742081448, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI193211015, Length=221, Percent_Identity=29.8642533936652, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI212646699, Length=232, Percent_Identity=28.0172413793103, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71992285, Length=241, Percent_Identity=29.045643153527, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI193211017, Length=220, Percent_Identity=28.1818181818182, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17569145, Length=220, Percent_Identity=29.5454545454545, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71984940, Length=230, Percent_Identity=29.1304347826087, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI193202349, Length=221, Percent_Identity=28.9592760180996, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=258, Percent_Identity=26.7441860465116, Blast_Score=81, Evalue=1e-16, Organism=Saccharomyces cerevisiae, GI6323217, Length=239, Percent_Identity=28.0334728033473, Blast_Score=72, Evalue=6e-14, Organism=Saccharomyces cerevisiae, GI6322980, Length=231, Percent_Identity=25.5411255411255, Blast_Score=65, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6319856, Length=229, Percent_Identity=27.5109170305677, Blast_Score=65, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6323959, Length=242, Percent_Identity=23.9669421487603, Blast_Score=63, Evalue=4e-11, Organism=Drosophila melanogaster, GI24641565, Length=222, Percent_Identity=33.3333333333333, Blast_Score=82, Evalue=5e-16, Organism=Drosophila melanogaster, GI23397593, Length=221, Percent_Identity=32.579185520362, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI17136662, Length=221, Percent_Identity=30.316742081448, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI281363262, Length=246, Percent_Identity=30.4878048780488, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24653245, Length=246, Percent_Identity=30.4878048780488, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI28574533, Length=217, Percent_Identity=28.110599078341, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24659289, Length=215, Percent_Identity=30.6976744186047, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI85726357, Length=238, Percent_Identity=26.4705882352941, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 28741; Mature: 28610
Theoretical pI: Translated: 5.49; Mature: 5.49
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLLVIEGLTLESSGQNLVSNLSLAVGPGARLGLIGESGSGKSLTALAAIGLLPPDISVK CCEEEEECEEECCCCHHHHHHCCEEECCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCC GSVRLDGKEVVGAREEELVPLRGAVAATVFQEPLTALDPLMKVGRQVAEPLVRRYRREGR CEEEECCHHHCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH ALDRKAVAREVRSLLERVSLPDIDRIMNAYPYEISGGQRQRVAIAMALACRPKLLIADEP HHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCC TTALDVTTQAEILELLSDLVRENGMALLFISHDLPVVARVVEEVAVLRRGELVEQGPVKT CCEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCHHHCCCCHH VFSAPSHDYTKTLVSAAAAFDQALEPIR HHCCCCCHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SLLVIEGLTLESSGQNLVSNLSLAVGPGARLGLIGESGSGKSLTALAAIGLLPPDISVK CEEEEECEEECCCCHHHHHHCCEEECCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCC GSVRLDGKEVVGAREEELVPLRGAVAATVFQEPLTALDPLMKVGRQVAEPLVRRYRREGR CEEEECCHHHCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH ALDRKAVAREVRSLLERVSLPDIDRIMNAYPYEISGGQRQRVAIAMALACRPKLLIADEP HHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCC TTALDVTTQAEILELLSDLVRENGMALLFISHDLPVVARVVEEVAVLRRGELVEQGPVKT CCEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCHHHCCCCHH VFSAPSHDYTKTLVSAAAAFDQALEPIR HHCCCCCHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]