Click here to switch to the map view.

The map label for this gene is rsmE [H]

Identifier: 110632733

GI number: 110632733

Start: 415307

End: 416053

Strand: Direct

Name: rsmE [H]

Synonym: Meso_0372

Alternate gene names: 110632733

Gene position: 415307-416053 (Clockwise)

Preceding gene: 110632732

Following gene: 110632734

Centisome position: 9.41

GC content: 62.92

Gene sequence:

>747_bases
ATGCGGGCGAATTACAAAATGCAGCGGCTCTACTTGCCGGAGGACCTTTCAAAAGGGGCGGAGGTCGAGACCACGCGCGA
GCAGGCCCATTATCTTGGCAACGTCCTGCGTATGCGCGGAGGGGCCGAACTGCTCGTTTTCAATGGCCGACATGGCGAGT
GGTTGGCCGAGGTGAAGGAGATTTCGAAGAAATCGGCTTTGCTTGCCGTCCGCGAGCTTACGCGCGAACAGACGCCGCAG
CCGGATATTCTTTATTGCTTTGCCCCGCTTAAGCAGGGCCGGCTGGACTACATGGTTCAAAAGGCCGTGGAGATGGGGGC
AGGGATACTGCAGCCGGTCATCACCCAGCACACGCAGATACCGAAGCTTGGCACGGACCGCCTTCAAGCAAATGTGATCG
AGGCGGCCGAGCAGTGCGGCATCCTATCCATTCCGCTGGTACGGGAGCCGGTGAAGCTTGATGTTTTGCTTTCCCGTTGG
GAGGAGGGGCGGCGCCTCGTCTTCTGCGATGAGGATGCGCCGGGCCAGAACCCGTTTCCACGCCTATCCGCCCTGGCAGG
CGAGAGACTCGGGCTTCTCGTCGGGCCGGAGGGCGGCTTTTCCGACTCTGAACGCCGCACCCTCCGAAGTCTTGCCTTTG
TCGTGCCGATTCCCCTCGGCCCCCGGATTCTGAGGGCGGACACGGCGGCGGTGGCGGCGCTCGCCATCCTCCAGGCGGCT
GCCGGCGACTGGCGCGACGAGGCTTGA

Upstream 100 bases:

>100_bases
CGCTTGCGACAGTGGCGGCTTTGCGGGCGGGCTATCGCCCGGTCTGGCATTCCTCTGCCGGCTCTTGACCAGGCAAAGGC
TTCAGAGGCATCAAGCGCCC

Downstream 100 bases:

>100_bases
GCCATCCTTCAGAACTTTTCGCTTGCCTGCCGTTTCGGTCTTCGCCAATGAGGCGGGGCTTCGCATAGTCTGCCGAGGAG
AAAATGGCGAGAGACACGAC

Product: 16S ribosomal RNA methyltransferase RsmE

Products: NA

Alternate protein names: 16S rRNA m3U1498 methyltransferase [H]

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MRANYKMQRLYLPEDLSKGAEVETTREQAHYLGNVLRMRGGAELLVFNGRHGEWLAEVKEISKKSALLAVRELTREQTPQ
PDILYCFAPLKQGRLDYMVQKAVEMGAGILQPVITQHTQIPKLGTDRLQANVIEAAEQCGILSIPLVREPVKLDVLLSRW
EEGRRLVFCDEDAPGQNPFPRLSALAGERLGLLVGPEGGFSDSERRTLRSLAFVVPIPLGPRILRADTAAVAALAILQAA
AGDWRDEA

Sequences:

>Translated_248_residues
MRANYKMQRLYLPEDLSKGAEVETTREQAHYLGNVLRMRGGAELLVFNGRHGEWLAEVKEISKKSALLAVRELTREQTPQ
PDILYCFAPLKQGRLDYMVQKAVEMGAGILQPVITQHTQIPKLGTDRLQANVIEAAEQCGILSIPLVREPVKLDVLLSRW
EEGRRLVFCDEDAPGQNPFPRLSALAGERLGLLVGPEGGFSDSERRTLRSLAFVVPIPLGPRILRADTAAVAALAILQAA
AGDWRDEA
>Mature_248_residues
MRANYKMQRLYLPEDLSKGAEVETTREQAHYLGNVLRMRGGAELLVFNGRHGEWLAEVKEISKKSALLAVRELTREQTPQ
PDILYCFAPLKQGRLDYMVQKAVEMGAGILQPVITQHTQIPKLGTDRLQANVIEAAEQCGILSIPLVREPVKLDVLLSRW
EEGRRLVFCDEDAPGQNPFPRLSALAGERLGLLVGPEGGFSDSERRTLRSLAFVVPIPLGPRILRADTAAVAALAILQAA
AGDWRDEA

Specific function: Specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [H]

COG id: COG1385

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase RsmE family [H]

Homologues:

Organism=Escherichia coli, GI87082186, Length=246, Percent_Identity=30.8943089430894, Blast_Score=111, Evalue=4e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015947
- InterPro:   IPR006700 [H]

Pfam domain/function: PF04452 Methyltrans_RNA [H]

EC number: =2.1.1.193 [H]

Molecular weight: Translated: 27444; Mature: 27444

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRANYKMQRLYLPEDLSKGAEVETTREQAHYLGNVLRMRGGAELLVFNGRHGEWLAEVKE
CCCCCCEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHH
ISKKSALLAVRELTREQTPQPDILYCFAPLKQGRLDYMVQKAVEMGAGILQPVITQHTQI
HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCC
PKLGTDRLQANVIEAAEQCGILSIPLVREPVKLDVLLSRWEEGRRLVFCDEDAPGQNPFP
CCCCHHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCH
RLSALAGERLGLLVGPEGGFSDSERRTLRSLAFVVPIPLGPRILRADTAAVAALAILQAA
HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHH
AGDWRDEA
CCCCCCCC
>Mature Secondary Structure
MRANYKMQRLYLPEDLSKGAEVETTREQAHYLGNVLRMRGGAELLVFNGRHGEWLAEVKE
CCCCCCEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHH
ISKKSALLAVRELTREQTPQPDILYCFAPLKQGRLDYMVQKAVEMGAGILQPVITQHTQI
HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCC
PKLGTDRLQANVIEAAEQCGILSIPLVREPVKLDVLLSRWEEGRRLVFCDEDAPGQNPFP
CCCCHHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCH
RLSALAGERLGLLVGPEGGFSDSERRTLRSLAFVVPIPLGPRILRADTAAVAALAILQAA
HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHH
AGDWRDEA
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]