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The map label for this gene is ykgF [H]

Identifier: 110632729

GI number: 110632729

Start: 411324

End: 412760

Strand: Direct

Name: ykgF [H]

Synonym: Meso_0368

Alternate gene names: 110632729

Gene position: 411324-412760 (Clockwise)

Preceding gene: 110632728

Following gene: 110632730

Centisome position: 9.32

GC content: 62.56

Gene sequence:

>1437_bases
ATGCAGATTACGTCACCGGCCTTCAAGGAAAATTCGCGTCAGGCGCTTTCGGATGCGCAGCTACAGAAGGCGCTCGGCAA
TGTGCGCTCCGGCTTCATCGACAAGCGCCAGAACTCAATCGACGCATTGCCGGAATTCGACGCCCTGCGCGATTCCGCCC
GTGCGATCAAGGACCATACGCTGGCCCATCTCGACCTCTATCTCGAATCATATGAGGAGAAGGTGAAGAAGGCGGGCGGC
TATGTACACTGGGCCGAGACCGCGGCGGACGCCCGCAACATCATCCTCGAGATCTGCCGTTCCGCCGGCGCTCGTACGGT
GACCAAGGGCAAGTCCATGATCACCGAGGAGATCGGGCTCAACGAATTTTTGGAGAAGGAAGGCGTCCGTCCGGTCGAAA
CGGATCTGGGGGAATATATTATCCAGCTTCGCGGCGAGCATCCGAGCCACATCATCGCTCCCGCCGTGCATCTTACCCAA
GAGCAGGTCGAGGCCGACTTCCGCCGCGTTCATGATCATCTTCCGGTCGCCCGCGACCTGTCCGAGCCGGAATCGCTCCT
GGCTGAGGCGCGGCGCGTGCTCCGCTATCGATATTTCCAGGCGGATGTCGGCATCACCGGCGCCAATTTCCTGGTGGCGG
AGACCGGCAGTTCCATCATCGTCACCAATGAAGGCAACGGCGACCTCACGCAGATCCTGCCGCGCGTGCATGTCGTCGTG
GCGTCGATCGAGAAGATCTTGCCGACATTGGAGGATGTGGGGCAGATCCTTCGCGTGCTTGCCCGTTCGGCCACGGGACA
GGACATGAGCGTCTACACCACCGTCTCCACAGGCCCACGGCGCCCGGGCGATCCGGATGGGCCGGAGGAGTACCATGTGG
TACTGGTCGACAATGGCCGGTCTTCGATGCTTGGAACGGAGTTTCAGGACATGCTGCGCTGCATTCGCTGCGGCGCCTGC
ATGAACCATTGCCCGGTCTATCACGCGGTCGGCGGACATGCCTATGGCTGGGTGTATCCGGGGCCCATGGGCGCGGTTCT
CACGCCATCGCTCGTCGGCGTGGAAAAAGCGGGGCATCTGCCCAACGCCTCCACCTTTTGCGGCCGCTGCGAATCCGTCT
GCCCCATGCGAATCCCGCTGCCCAAGATGATGCGCCACTGGCGAGAGCGCGAATTCTCGCGCGGCCTCAATCCCGCCACG
CAGCGCTATGGGCTGCGCGCCTGGGCGATGGTCGCCAAGCGGCCGAAGCTTTACCGGTTCGCAACGTCCATAGGCATTCC
CCTGCTGTCGTTCTTCAAAGGCCGGAAAGGCAGTTTCCATTACCTGCCGCTTGCCGGCGGCTGGACCCGCCACCGCGAGT
TGCCGGCGCCTGAAGGCCGCACCTTTATGCAGCAGTGGCGCGATCGCGATGTGCGGAAGCAGGAGGCAGTTGCATGA

Upstream 100 bases:

>100_bases
GAAAGCTTCAGCGTCAGGGCGCCGACGTGAAGGTGCGCCATGTGGCCGAGGTGCTCGCCGGCATGGTGGATGGGCCGGCA
ATCGGGAAGGATAAGCGCTG

Downstream 100 bases:

>100_bases
GCGGGAGGGAGGCAATTCTGAACAAGGTACGTGCTGCCATAGGGGCATCCCCCGACGATACGGCGCGCGCCAGGATTGTG
AAGAAAAGGCTAGCGAAGCC

Product: iron-sulfur cluster binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 478

Protein sequence:

>478_residues
MQITSPAFKENSRQALSDAQLQKALGNVRSGFIDKRQNSIDALPEFDALRDSARAIKDHTLAHLDLYLESYEEKVKKAGG
YVHWAETAADARNIILEICRSAGARTVTKGKSMITEEIGLNEFLEKEGVRPVETDLGEYIIQLRGEHPSHIIAPAVHLTQ
EQVEADFRRVHDHLPVARDLSEPESLLAEARRVLRYRYFQADVGITGANFLVAETGSSIIVTNEGNGDLTQILPRVHVVV
ASIEKILPTLEDVGQILRVLARSATGQDMSVYTTVSTGPRRPGDPDGPEEYHVVLVDNGRSSMLGTEFQDMLRCIRCGAC
MNHCPVYHAVGGHAYGWVYPGPMGAVLTPSLVGVEKAGHLPNASTFCGRCESVCPMRIPLPKMMRHWREREFSRGLNPAT
QRYGLRAWAMVAKRPKLYRFATSIGIPLLSFFKGRKGSFHYLPLAGGWTRHRELPAPEGRTFMQQWRDRDVRKQEAVA

Sequences:

>Translated_478_residues
MQITSPAFKENSRQALSDAQLQKALGNVRSGFIDKRQNSIDALPEFDALRDSARAIKDHTLAHLDLYLESYEEKVKKAGG
YVHWAETAADARNIILEICRSAGARTVTKGKSMITEEIGLNEFLEKEGVRPVETDLGEYIIQLRGEHPSHIIAPAVHLTQ
EQVEADFRRVHDHLPVARDLSEPESLLAEARRVLRYRYFQADVGITGANFLVAETGSSIIVTNEGNGDLTQILPRVHVVV
ASIEKILPTLEDVGQILRVLARSATGQDMSVYTTVSTGPRRPGDPDGPEEYHVVLVDNGRSSMLGTEFQDMLRCIRCGAC
MNHCPVYHAVGGHAYGWVYPGPMGAVLTPSLVGVEKAGHLPNASTFCGRCESVCPMRIPLPKMMRHWREREFSRGLNPAT
QRYGLRAWAMVAKRPKLYRFATSIGIPLLSFFKGRKGSFHYLPLAGGWTRHRELPAPEGRTFMQQWRDRDVRKQEAVA
>Mature_478_residues
MQITSPAFKENSRQALSDAQLQKALGNVRSGFIDKRQNSIDALPEFDALRDSARAIKDHTLAHLDLYLESYEEKVKKAGG
YVHWAETAADARNIILEICRSAGARTVTKGKSMITEEIGLNEFLEKEGVRPVETDLGEYIIQLRGEHPSHIIAPAVHLTQ
EQVEADFRRVHDHLPVARDLSEPESLLAEARRVLRYRYFQADVGITGANFLVAETGSSIIVTNEGNGDLTQILPRVHVVV
ASIEKILPTLEDVGQILRVLARSATGQDMSVYTTVSTGPRRPGDPDGPEEYHVVLVDNGRSSMLGTEFQDMLRCIRCGAC
MNHCPVYHAVGGHAYGWVYPGPMGAVLTPSLVGVEKAGHLPNASTFCGRCESVCPMRIPLPKMMRHWREREFSRGLNPAT
QRYGLRAWAMVAKRPKLYRFATSIGIPLLSFFKGRKGSFHYLPLAGGWTRHRELPAPEGRTFMQQWRDRDVRKQEAVA

Specific function: Unknown

COG id: COG1139

COG function: function code C; Uncharacterized conserved protein containing a ferredoxin-like domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1786498, Length=476, Percent_Identity=39.9159663865546, Blast_Score=382, Evalue=1e-107,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR003741
- InterPro:   IPR004452
- InterPro:   IPR002698
- InterPro:   IPR012285
- InterPro:   IPR009051 [H]

Pfam domain/function: PF02589 DUF162 [H]

EC number: NA

Molecular weight: Translated: 53315; Mature: 53315

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQITSPAFKENSRQALSDAQLQKALGNVRSGFIDKRQNSIDALPEFDALRDSARAIKDHT
CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
LAHLDLYLESYEEKVKKAGGYVHWAETAADARNIILEICRSAGARTVTKGKSMITEEIGL
HHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCH
NEFLEKEGVRPVETDLGEYIIQLRGEHPSHIIAPAVHLTQEQVEADFRRVHDHLPVARDL
HHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHCC
SEPESLLAEARRVLRYRYFQADVGITGANFLVAETGSSIIVTNEGNGDLTQILPRVHVVV
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHH
ASIEKILPTLEDVGQILRVLARSATGQDMSVYTTVSTGPRRPGDPDGPEEYHVVLVDNGR
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCC
SSMLGTEFQDMLRCIRCGACMNHCPVYHAVGGHAYGWVYPGPMGAVLTPSLVGVEKAGHL
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHCCHHHHHHHCCCC
PNASTFCGRCESVCPMRIPLPKMMRHWREREFSRGLNPATQRYGLRAWAMVAKRPKLYRF
CCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHH
ATSIGIPLLSFFKGRKGSFHYLPLAGGWTRHRELPAPEGRTFMQQWRDRDVRKQEAVA
HHHHHHHHHHHHCCCCCCEEEEECCCCCHHCCCCCCCCCHHHHHHHHCCHHHHHHCCC
>Mature Secondary Structure
MQITSPAFKENSRQALSDAQLQKALGNVRSGFIDKRQNSIDALPEFDALRDSARAIKDHT
CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
LAHLDLYLESYEEKVKKAGGYVHWAETAADARNIILEICRSAGARTVTKGKSMITEEIGL
HHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCH
NEFLEKEGVRPVETDLGEYIIQLRGEHPSHIIAPAVHLTQEQVEADFRRVHDHLPVARDL
HHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHCC
SEPESLLAEARRVLRYRYFQADVGITGANFLVAETGSSIIVTNEGNGDLTQILPRVHVVV
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHH
ASIEKILPTLEDVGQILRVLARSATGQDMSVYTTVSTGPRRPGDPDGPEEYHVVLVDNGR
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCC
SSMLGTEFQDMLRCIRCGACMNHCPVYHAVGGHAYGWVYPGPMGAVLTPSLVGVEKAGHL
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHCCHHHHHHHCCCC
PNASTFCGRCESVCPMRIPLPKMMRHWREREFSRGLNPATQRYGLRAWAMVAKRPKLYRF
CCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHH
ATSIGIPLLSFFKGRKGSFHYLPLAGGWTRHRELPAPEGRTFMQQWRDRDVRKQEAVA
HHHHHHHHHHHHCCCCCCEEEEECCCCCHHCCCCCCCCCHHHHHHHHCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]