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The map label for this gene is glcF [H]

Identifier: 110632722

GI number: 110632722

Start: 403584

End: 404915

Strand: Reverse

Name: glcF [H]

Synonym: Meso_0361

Alternate gene names: 110632722

Gene position: 404915-403584 (Counterclockwise)

Preceding gene: 110632723

Following gene: 110632720

Centisome position: 9.18

GC content: 65.17

Gene sequence:

>1332_bases
ATGCAGACAAACTTCACGCCCGAGCAGCTTGCCGACCCGCATACCGCGGAATCGGAGACGATCCTGCGCAAATGCGTCCA
CTGCGGGTTCTGCACCGCCACCTGCCCCACATATGTGGAGCTCGGCAACGAGCTCGATTCACCGCGCGGGCGCATCTATC
TCATCAAGGAGATGCTGGAGAATGGACGGCCCGCCGATCGCGAGACCGTGACCCATATCGACCGCTGCCTCTCCTGCCTT
TCCTGCATGACCACCTGCCCCTCGGGCGTGAACTACATGCATCTGGTCGACCACGCGCGGACATATATCGAGAAGACCTA
TCGCCGGCCATTGTTGGACCGGCTGATGCGCGCGATGCTCGCCCGCGTGCTCCCCTATCCCGGCCGATTCCGGCTCGCGC
TGAGGCTGGCAAGAATAGGGCGCCCCTTCGCGCCGCTTTTCCGCGCCATACCCGGCCTGAAACCGGTGGCCTCAATGCTG
GAACTTGCGCCGCAGCAAACGCCCGCGGCCGAGGCCTCTGCCGCCCTCAAACCGGAGGGGCGGCCGCAGGGCCGGGTCGC
ACTGCTCGCCGGATGCGCGCAATCCGTGCTCGATCCAGGAATCAACGCCGCTACCTCGCGGCTCCTTTCGCGGTTGGGTG
TCGAGGTGGTGCGGCCCGAGGGGGAAGGCTGCTGCGGCGCGCTGGTGCACCATATGGGCCGCGAGGAAGAGGCGCTTGCC
TTCGCGCGGCGCAATGTTGACGCGTGGATGCGTGTCATCAACGGCGGCGGGCTCGATGCCATCATCATCACGGCTTCAGG
CTGCGGGACGACCATCAAGGATTATGGGCACATGCTTCGGCTCGACCCGGCCTATGCCGAAAAGGCCCGGCAGGTCTCCG
CGCTCGCGAAGGATGTTACGGAGTACCTCGCCACATTCGACCTGCCTGAGCCGGAAATCCCGCCGGGGCTGACCATCGCC
TATCATTCCGCCTGCTCGCTGCAGCATGGCCAAAAGATCACGCGACAGCCCAAGGCACTGCTCACCCGCGCGGGCTTTAT
CGTGAAGGAGCCGCGTGAGGGACATCTGTGCTGCGGCTCAGCCGGCACTTACAACATCCTGCAGCCGGACATATCGCGGC
GGCTGCGCGACCGGAAGGTGGAGAACATCGAGGCCACCGGCGCGGTGGCGGTTGCCGCGGGCAATATCGGCTGCATCACG
CAAATCGCCTCGGGCTCAGCATTGCCAATCGTGCATACGGTCGAGCTGCTGGACTGGGCCTATGGCGGCCCGAAACCTGG
AGGTCTTCCGGAGGCGGAACAAAAAGCTGGGCAGGCCGCCGTGGCCGCATAA

Upstream 100 bases:

>100_bases
GTCGCCGTGTGGATCGTCGTGCGCGCCGTTGTCGGCCTGCAACTGGTGGGACGCGGAGAGCCGATCAAAAATCCTCAAAG
CTGGATGCTTTAGACAGAAG

Downstream 100 bases:

>100_bases
AAAAGCAGCGCTTCATCGCTGAAGCGCTGCCTTTTCGAAGACAATACCGGCAAGACCCCTCCGGCCGGCTCGTCCCCCGC
ATCTGAGAATCAGATTACCA

Product: protein of unknown function DUF224, cysteine-rich region

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 443

Protein sequence:

>443_residues
MQTNFTPEQLADPHTAESETILRKCVHCGFCTATCPTYVELGNELDSPRGRIYLIKEMLENGRPADRETVTHIDRCLSCL
SCMTTCPSGVNYMHLVDHARTYIEKTYRRPLLDRLMRAMLARVLPYPGRFRLALRLARIGRPFAPLFRAIPGLKPVASML
ELAPQQTPAAEASAALKPEGRPQGRVALLAGCAQSVLDPGINAATSRLLSRLGVEVVRPEGEGCCGALVHHMGREEEALA
FARRNVDAWMRVINGGGLDAIIITASGCGTTIKDYGHMLRLDPAYAEKARQVSALAKDVTEYLATFDLPEPEIPPGLTIA
YHSACSLQHGQKITRQPKALLTRAGFIVKEPREGHLCCGSAGTYNILQPDISRRLRDRKVENIEATGAVAVAAGNIGCIT
QIASGSALPIVHTVELLDWAYGGPKPGGLPEAEQKAGQAAVAA

Sequences:

>Translated_443_residues
MQTNFTPEQLADPHTAESETILRKCVHCGFCTATCPTYVELGNELDSPRGRIYLIKEMLENGRPADRETVTHIDRCLSCL
SCMTTCPSGVNYMHLVDHARTYIEKTYRRPLLDRLMRAMLARVLPYPGRFRLALRLARIGRPFAPLFRAIPGLKPVASML
ELAPQQTPAAEASAALKPEGRPQGRVALLAGCAQSVLDPGINAATSRLLSRLGVEVVRPEGEGCCGALVHHMGREEEALA
FARRNVDAWMRVINGGGLDAIIITASGCGTTIKDYGHMLRLDPAYAEKARQVSALAKDVTEYLATFDLPEPEIPPGLTIA
YHSACSLQHGQKITRQPKALLTRAGFIVKEPREGHLCCGSAGTYNILQPDISRRLRDRKVENIEATGAVAVAAGNIGCIT
QIASGSALPIVHTVELLDWAYGGPKPGGLPEAEQKAGQAAVAA
>Mature_443_residues
MQTNFTPEQLADPHTAESETILRKCVHCGFCTATCPTYVELGNELDSPRGRIYLIKEMLENGRPADRETVTHIDRCLSCL
SCMTTCPSGVNYMHLVDHARTYIEKTYRRPLLDRLMRAMLARVLPYPGRFRLALRLARIGRPFAPLFRAIPGLKPVASML
ELAPQQTPAAEASAALKPEGRPQGRVALLAGCAQSVLDPGINAATSRLLSRLGVEVVRPEGEGCCGALVHHMGREEEALA
FARRNVDAWMRVINGGGLDAIIITASGCGTTIKDYGHMLRLDPAYAEKARQVSALAKDVTEYLATFDLPEPEIPPGLTIA
YHSACSLQHGQKITRQPKALLTRAGFIVKEPREGHLCCGSAGTYNILQPDISRRLRDRKVENIEATGAVAVAAGNIGCIT
QIASGSALPIVHTVELLDWAYGGPKPGGLPEAEQKAGQAAVAA

Specific function: Unknown

COG id: COG0247

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI48994913, Length=420, Percent_Identity=44.2857142857143, Blast_Score=358, Evalue=1e-100,
Organism=Escherichia coli, GI1786497, Length=241, Percent_Identity=25.3112033195021, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR004017
- InterPro:   IPR012285
- InterPro:   IPR012257 [H]

Pfam domain/function: PF02754 CCG [H]

EC number: NA

Molecular weight: Translated: 47871; Mature: 47871

Theoretical pI: Translated: 8.14; Mature: 8.14

Prosite motif: PS00732 RIBOSOMAL_S16 ; PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTNFTPEQLADPHTAESETILRKCVHCGFCTATCPTYVELGNELDSPRGRIYLIKEMLE
CCCCCCHHHHCCCCCCHHHHHHHHHHHCCCHHHCCHHHHHHCCCCCCCCCCEEEHHHHHH
NGRPADRETVTHIDRCLSCLSCMTTCPSGVNYMHLVDHARTYIEKTYRRPLLDRLMRAML
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARVLPYPGRFRLALRLARIGRPFAPLFRAIPGLKPVASMLELAPQQTPAAEASAALKPEG
HHHCCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHCCCCCCC
RPQGRVALLAGCAQSVLDPGINAATSRLLSRLGVEVVRPEGEGCCGALVHHMGREEEALA
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEECCCCCCHHHHHHHHCCCHHHHHH
FARRNVDAWMRVINGGGLDAIIITASGCGTTIKDYGHMLRLDPAYAEKARQVSALAKDVT
HHHHCHHHHHHHHCCCCCEEEEEEECCCCCCHHHCCCEEECCHHHHHHHHHHHHHHHHHH
EYLATFDLPEPEIPPGLTIAYHSACSLQHGQKITRQPKALLTRAGFIVKEPREGHLCCGS
HHHHHCCCCCCCCCCCCEEEEHHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCCCEEECC
AGTYNILQPDISRRLRDRKVENIEATGAVAVAAGNIGCITQIASGSALPIVHTVELLDWA
CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHH
YGGPKPGGLPEAEQKAGQAAVAA
CCCCCCCCCCHHHHHCCCHHCCC
>Mature Secondary Structure
MQTNFTPEQLADPHTAESETILRKCVHCGFCTATCPTYVELGNELDSPRGRIYLIKEMLE
CCCCCCHHHHCCCCCCHHHHHHHHHHHCCCHHHCCHHHHHHCCCCCCCCCCEEEHHHHHH
NGRPADRETVTHIDRCLSCLSCMTTCPSGVNYMHLVDHARTYIEKTYRRPLLDRLMRAML
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARVLPYPGRFRLALRLARIGRPFAPLFRAIPGLKPVASMLELAPQQTPAAEASAALKPEG
HHHCCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHCCCCCCC
RPQGRVALLAGCAQSVLDPGINAATSRLLSRLGVEVVRPEGEGCCGALVHHMGREEEALA
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEECCCCCCHHHHHHHHCCCHHHHHH
FARRNVDAWMRVINGGGLDAIIITASGCGTTIKDYGHMLRLDPAYAEKARQVSALAKDVT
HHHHCHHHHHHHHCCCCCEEEEEEECCCCCCHHHCCCEEECCHHHHHHHHHHHHHHHHHH
EYLATFDLPEPEIPPGLTIAYHSACSLQHGQKITRQPKALLTRAGFIVKEPREGHLCCGS
HHHHHCCCCCCCCCCCCEEEEHHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCCCEEECC
AGTYNILQPDISRRLRDRKVENIEATGAVAVAAGNIGCITQIASGSALPIVHTVELLDWA
CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHH
YGGPKPGGLPEAEQKAGQAAVAA
CCCCCCCCCCHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8606183; 9278503 [H]