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The map label for this gene is deoC [H]

Identifier: 110632675

GI number: 110632675

Start: 349474

End: 350475

Strand: Reverse

Name: deoC [H]

Synonym: Meso_0314

Alternate gene names: 110632675

Gene position: 350475-349474 (Counterclockwise)

Preceding gene: 110632676

Following gene: 110632674

Centisome position: 7.94

GC content: 64.57

Gene sequence:

>1002_bases
ATGGTCCTGCCGGAAAAGCACCCGACCATCAAAGCAGTGCCCACAGCCGGACATGAGGGCCGAAACCGGGGCACCGCACT
CAAGCCCGAATGGTTCGAGGACGCGGCGGTGAACCTGTCCGCCGCCGAACGGCGCGCAGCGACCCTGACGACGCGCCGCA
CGGTTAAGAAGGAATGGCAGGCTGCCTGGCTCGTGCGGGCCATCACCTGCATCGACCTCACCACGCTTTCCGGCGATGAT
ACGGCTGGCCGCGTGCGCCGGCTCTGCGCAAAGGCGAAGAAGCCGCTTTCCGATGAATTGCAGGCGGCGCTCGGGCTTTC
GGAGGAGCGCATCACCGTGGGCGCGGTCTGCGTTTACCCAACCATGGTGCCGCATGCGGTGAAGGCATTGCAGGGCTCGG
GCATTCCTGTCGCCTCCGTCGCCACTGGTTTCCCGGCGGGCCTAACGCCCTTGCCGCAGCGCCTTGCGGAAATCCGCTAT
GCGGTCGAGGAAGGTGCTGACGAGATCGACATCGTAATCACCCGCGAGCACGTTCTGACGCAGAACTGGCCCGCACTCTA
TGATGAGGTGCGCGCCATGCGCGAGGCCTGCGGCCATGCGCATCTGAAGACCATTCTCGCCACCGGCGACCTTGCCACGC
TCAGGAATGTCTACCGCGCGTCGATGGTTGCCATGCAGGCTGGCGCCGACTTCATCAAGACCTCTACCGGCAAGGAAGAG
GTGAACGCCATTCTGCCCGTGGGGCTCACCATGGTGCGCGCCATACGCGACTATCAGGCGTTTTCCGGTGAGACCGTGGG
CTTCAAACCGGCCGGCGGCATGCGCACCGCCAAGGATGCACTCGCTTGGCTGATCCTCATGAAGGAGGAACTGGACACGC
ACTGGACCATGCCGGACCGCTTCCGCCTCGGCGCCAGCTCCATGCTGGGCGACATCGAAAGGCAACTCGAACATTTCGCC
ACCGGGCGCTACTCGGCGTCCTATCGGCATCCCCTCGCTTGA

Upstream 100 bases:

>100_bases
TTAAGCCCCTAACCTCTCACATCGTCTATCCAAACCCGATGAGCGGCCGTATCATTGCGACGACCGTTCTGCGCAACCGC
TCGACATTGGAGGATCGTGC

Downstream 100 bases:

>100_bases
GGCAGCACGCCATGGAACAGATCAGGGACATCATGCGCAGGATGGAATACGGGCCAGCCCCGGAGGCGAATGAGGACGTG
GTCGCCTGGCTGAAGGCCCG

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MVLPEKHPTIKAVPTAGHEGRNRGTALKPEWFEDAAVNLSAAERRAATLTTRRTVKKEWQAAWLVRAITCIDLTTLSGDD
TAGRVRRLCAKAKKPLSDELQAALGLSEERITVGAVCVYPTMVPHAVKALQGSGIPVASVATGFPAGLTPLPQRLAEIRY
AVEEGADEIDIVITREHVLTQNWPALYDEVRAMREACGHAHLKTILATGDLATLRNVYRASMVAMQAGADFIKTSTGKEE
VNAILPVGLTMVRAIRDYQAFSGETVGFKPAGGMRTAKDALAWLILMKEELDTHWTMPDRFRLGASSMLGDIERQLEHFA
TGRYSASYRHPLA

Sequences:

>Translated_333_residues
MVLPEKHPTIKAVPTAGHEGRNRGTALKPEWFEDAAVNLSAAERRAATLTTRRTVKKEWQAAWLVRAITCIDLTTLSGDD
TAGRVRRLCAKAKKPLSDELQAALGLSEERITVGAVCVYPTMVPHAVKALQGSGIPVASVATGFPAGLTPLPQRLAEIRY
AVEEGADEIDIVITREHVLTQNWPALYDEVRAMREACGHAHLKTILATGDLATLRNVYRASMVAMQAGADFIKTSTGKEE
VNAILPVGLTMVRAIRDYQAFSGETVGFKPAGGMRTAKDALAWLILMKEELDTHWTMPDRFRLGASSMLGDIERQLEHFA
TGRYSASYRHPLA
>Mature_333_residues
MVLPEKHPTIKAVPTAGHEGRNRGTALKPEWFEDAAVNLSAAERRAATLTTRRTVKKEWQAAWLVRAITCIDLTTLSGDD
TAGRVRRLCAKAKKPLSDELQAALGLSEERITVGAVCVYPTMVPHAVKALQGSGIPVASVATGFPAGLTPLPQRLAEIRY
AVEEGADEIDIVITREHVLTQNWPALYDEVRAMREACGHAHLKTILATGDLATLRNVYRASMVAMQAGADFIKTSTGKEE
VNAILPVGLTMVRAIRDYQAFSGETVGFKPAGGMRTAKDALAWLILMKEELDTHWTMPDRFRLGASSMLGDIERQLEHFA
TGRYSASYRHPLA

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 2 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=314, Percent_Identity=61.1464968152866, Blast_Score=388, Evalue=1e-108,
Organism=Escherichia coli, GI1790841, Length=268, Percent_Identity=39.1791044776119, Blast_Score=144, Evalue=1e-35,
Organism=Caenorhabditis elegans, GI17533015, Length=286, Percent_Identity=43.7062937062937, Blast_Score=227, Evalue=7e-60,
Organism=Drosophila melanogaster, GI19922098, Length=286, Percent_Identity=50.3496503496504, Blast_Score=264, Evalue=6e-71,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 36367; Mature: 36367

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLPEKHPTIKAVPTAGHEGRNRGTALKPEWFEDAAVNLSAAERRAATLTTRRTVKKEWQ
CCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
AAWLVRAITCIDLTTLSGDDTAGRVRRLCAKAKKPLSDELQAALGLSEERITVGAVCVYP
HHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEHHHHH
TMVPHAVKALQGSGIPVASVATGFPAGLTPLPQRLAEIRYAVEEGADEIDIVITREHVLT
HHHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHH
QNWPALYDEVRAMREACGHAHLKTILATGDLATLRNVYRASMVAMQAGADFIKTSTGKEE
CCCHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCHHH
VNAILPVGLTMVRAIRDYQAFSGETVGFKPAGGMRTAKDALAWLILMKEELDTHWTMPDR
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHH
FRLGASSMLGDIERQLEHFATGRYSASYRHPLA
HHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MVLPEKHPTIKAVPTAGHEGRNRGTALKPEWFEDAAVNLSAAERRAATLTTRRTVKKEWQ
CCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
AAWLVRAITCIDLTTLSGDDTAGRVRRLCAKAKKPLSDELQAALGLSEERITVGAVCVYP
HHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEHHHHH
TMVPHAVKALQGSGIPVASVATGFPAGLTPLPQRLAEIRYAVEEGADEIDIVITREHVLT
HHHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHH
QNWPALYDEVRAMREACGHAHLKTILATGDLATLRNVYRASMVAMQAGADFIKTSTGKEE
CCCHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCHHH
VNAILPVGLTMVRAIRDYQAFSGETVGFKPAGGMRTAKDALAWLILMKEELDTHWTMPDR
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHH
FRLGASSMLGDIERQLEHFATGRYSASYRHPLA
HHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA