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The map label for this gene is rbsC [H]

Identifier: 110632624

GI number: 110632624

Start: 303433

End: 304425

Strand: Reverse

Name: rbsC [H]

Synonym: Meso_0263

Alternate gene names: 110632624

Gene position: 304425-303433 (Counterclockwise)

Preceding gene: 110632625

Following gene: 110632623

Centisome position: 6.9

GC content: 64.75

Gene sequence:

>993_bases
ATGAGCGTGGAGGCCGCAGGCAAGGCGGAAGCCTCGCGCTTCTCCCTTACGAACCTGATCAGGCAGCCGCTCCTGGTGGC
GCTGGTCCTAATCGTGCTCCTGCTTGCGCTGGGCGAGATGCTGTCGCCGGGATTTGCCTCGCCGCAGCAGATCCTGCGGC
TGCTGATCGTGGCAGCTCTTCTCGGCATCGTCGCAGCCGGCCAGAACCTCGTTATTCTCGGCGGGCGCGAGGGCATCGAT
CTTTCGGTCGGCGGAATCGTCTCGTTGAGCGCGATCATTGCCGGCAATGTGATGAACGGCGCGGACAGCGGCATCCTTCC
CGCCATCCTCGCCTGCGTGGCGGCGGGCGCGCTCTTCGGCACCTTCAACGGTATCGGCGTCACGCTGCTGCGCATTCCGC
CGCTGGTGATGACGCTGGGCATGCTTGGCGTCCTGCAGGGCCTGCTGGTCGTCATTCGCCAGGGCGTTCCCTCGGGAAGG
GCTGCGCCCGCGCTGTCGGAATTCGTCACCCGACCATTCCTCCTCGGCCTGCCGGGCATCATCTGGCTGTGGGTCCTGAT
CGGCCTTCTGATGGCCTTCCTGCTCAGGCGCACCGTTTTCGGATATCGTGTCTACGCCATCGGCTCCAACGAGCAGGCAG
CGTTCCTTGCGGGCGTGCCCGTGCGGCTCATCCGCATCTCGCTTTTCACGCTTTCCGGCGCCTTTGCCGGCCTTGCCGGC
TTATGCCTCATCGGCTATGCGGGCAGCTCCTTCGCCAATGTGGGCGAACTTTACATGCTGCCATCGATCATCGCTGTCGT
ACTGGGCGGTACGCCCCTGTCCGGCGGCAAAGGCGGCTATACGGGCACGATGGCGGGCGCCGTCCTGCTCGTTATCCTGC
AGAGCATCCTCACCACCATAAATATCGACGAATCCGGCCGGCAGATGATCTTCGGCGCGACGCTGCTCGTGCTGATGCTC
TTCTATGGCCGCGGGCGGGCCATGCGCGCATGA

Upstream 100 bases:

>100_bases
TCTATGTCGGCACGCCCTCGCAGTGGCAGAACCTCGTGCAGGGCCTCGCGATTCTCCTCGCGCTGATGCTCGGCGTCATG
GTCACCCGGAGGGTCCAGCG

Downstream 100 bases:

>100_bases
GCCGAGCCCGCATCAAGGATATCGCAGCGGAACTCGGCCTTTCGCCAGCCACGGTCTCCCGCGCCCTGAGCCATTCGCCG
CTGGTGGCGGAGCCCACACG

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 329

Protein sequence:

>330_residues
MSVEAAGKAEASRFSLTNLIRQPLLVALVLIVLLLALGEMLSPGFASPQQILRLLIVAALLGIVAAGQNLVILGGREGID
LSVGGIVSLSAIIAGNVMNGADSGILPAILACVAAGALFGTFNGIGVTLLRIPPLVMTLGMLGVLQGLLVVIRQGVPSGR
AAPALSEFVTRPFLLGLPGIIWLWVLIGLLMAFLLRRTVFGYRVYAIGSNEQAAFLAGVPVRLIRISLFTLSGAFAGLAG
LCLIGYAGSSFANVGELYMLPSIIAVVLGGTPLSGGKGGYTGTMAGAVLLVILQSILTTINIDESGRQMIFGATLLVLML
FYGRGRAMRA

Sequences:

>Translated_330_residues
MSVEAAGKAEASRFSLTNLIRQPLLVALVLIVLLLALGEMLSPGFASPQQILRLLIVAALLGIVAAGQNLVILGGREGID
LSVGGIVSLSAIIAGNVMNGADSGILPAILACVAAGALFGTFNGIGVTLLRIPPLVMTLGMLGVLQGLLVVIRQGVPSGR
AAPALSEFVTRPFLLGLPGIIWLWVLIGLLMAFLLRRTVFGYRVYAIGSNEQAAFLAGVPVRLIRISLFTLSGAFAGLAG
LCLIGYAGSSFANVGELYMLPSIIAVVLGGTPLSGGKGGYTGTMAGAVLLVILQSILTTINIDESGRQMIFGATLLVLML
FYGRGRAMRA
>Mature_329_residues
SVEAAGKAEASRFSLTNLIRQPLLVALVLIVLLLALGEMLSPGFASPQQILRLLIVAALLGIVAAGQNLVILGGREGIDL
SVGGIVSLSAIIAGNVMNGADSGILPAILACVAAGALFGTFNGIGVTLLRIPPLVMTLGMLGVLQGLLVVIRQGVPSGRA
APALSEFVTRPFLLGLPGIIWLWVLIGLLMAFLLRRTVFGYRVYAIGSNEQAAFLAGVPVRLIRISLFTLSGAFAGLAGL
CLIGYAGSSFANVGELYMLPSIIAVVLGGTPLSGGKGGYTGTMAGAVLLVILQSILTTINIDESGRQMIFGATLLVLMLF
YGRGRAMRA

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=318, Percent_Identity=33.0188679245283, Blast_Score=114, Evalue=9e-27,
Organism=Escherichia coli, GI87082395, Length=299, Percent_Identity=34.1137123745819, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1787793, Length=293, Percent_Identity=36.518771331058, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1788896, Length=293, Percent_Identity=31.740614334471, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI145693152, Length=323, Percent_Identity=30.6501547987616, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI1790524, Length=273, Percent_Identity=26.7399267399267, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789992, Length=124, Percent_Identity=34.6774193548387, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787794, Length=279, Percent_Identity=27.5985663082437, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI145693214, Length=248, Percent_Identity=34.6774193548387, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788471, Length=209, Percent_Identity=29.6650717703349, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34026; Mature: 33894

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVEAAGKAEASRFSLTNLIRQPLLVALVLIVLLLALGEMLSPGFASPQQILRLLIVAAL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
LGIVAAGQNLVILGGREGIDLSVGGIVSLSAIIAGNVMNGADSGILPAILACVAAGALFG
HHHHHCCCCEEEEECCCCCCEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
TFNGIGVTLLRIPPLVMTLGMLGVLQGLLVVIRQGVPSGRAAPALSEFVTRPFLLGLPGI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHH
IWLWVLIGLLMAFLLRRTVFGYRVYAIGSNEQAAFLAGVPVRLIRISLFTLSGAFAGLAG
HHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHH
LCLIGYAGSSFANVGELYMLPSIIAVVLGGTPLSGGKGGYTGTMAGAVLLVILQSILTTI
HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
NIDESGRQMIFGATLLVLMLFYGRGRAMRA
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SVEAAGKAEASRFSLTNLIRQPLLVALVLIVLLLALGEMLSPGFASPQQILRLLIVAAL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
LGIVAAGQNLVILGGREGIDLSVGGIVSLSAIIAGNVMNGADSGILPAILACVAAGALFG
HHHHHCCCCEEEEECCCCCCEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
TFNGIGVTLLRIPPLVMTLGMLGVLQGLLVVIRQGVPSGRAAPALSEFVTRPFLLGLPGI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHH
IWLWVLIGLLMAFLLRRTVFGYRVYAIGSNEQAAFLAGVPVRLIRISLFTLSGAFAGLAG
HHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHH
LCLIGYAGSSFANVGELYMLPSIIAVVLGGTPLSGGKGGYTGTMAGAVLLVILQSILTTI
HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
NIDESGRQMIFGATLLVLMLFYGRGRAMRA
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]