| Definition | Mesorhizobium sp. BNC1, complete genome. |
|---|---|
| Accession | NC_008254 |
| Length | 4,412,446 |
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The map label for this gene is kduD [H]
Identifier: 110632621
GI number: 110632621
Start: 300195
End: 300953
Strand: Reverse
Name: kduD [H]
Synonym: Meso_0260
Alternate gene names: 110632621
Gene position: 300953-300195 (Counterclockwise)
Preceding gene: 110632622
Following gene: 110632620
Centisome position: 6.82
GC content: 65.48
Gene sequence:
>759_bases ATGACCTCCACCTTCAGCCTCGAAAGCCGGAGGATCATGGTTACGGGTGCCAATACGGGCATCGGCCAGGGCATCGCCGT GGCCGCAGCGCGCGCCGGAGCCGAAGTACTGGGCGTCGGCCGTTCGTCCATGGACGAGAGCGAGAAGCTCGTGGAGGCGC AGGGGACCAGCTTCACCGCGATTTCGTGCGACCTAGCAGATCCGGCCGCCTCCAGCGCCATGTTCGATCGGGCTTGGGAG GAACATGGGCCCATCGACGGGCTCGTCAACAATGCCGGCATCATCCGCCGAGTGGATGCCGTCGACCTCACCGAGGCCGA CTGGGACGACGTGATGGACATTAATCTCAAGACGCTCTTCACGCTCTGCCAAGCCTTCGGCCGCAAGCTGATTGCCGGCG GGCGGCGTGGCAAAATCGTCAACGTCGCCTCGGTGCTTTCCTTTCAGGGCGGGATACGCGTTGCCTCCTACACGGCTTCC AAACACGGGGTGCTGGGTTTGACGCGGGTGCTGGCCTGCGAGTGGGCGGGAAAAGGCATTAACGTCAACGCCGTGGCGCC CGGCTATATCGAGACGAACAACACCGAGGCCCTGCGCAACGACCCGGACCGCAGCGACTCAATCCTTGCGCGCATCCCGG CCGGGCGCTGGGGCCGCCCCGAGGACATCGGCGACGCGGCCGTTTTCCTGCTCGCGCCCGCCTCGGACTATATGCATGGT GCCGTTATCCCCGTCGATGGCGGCTGGCTCGCACGCTAG
Upstream 100 bases:
>100_bases TCCATTCGGGTTGCGGCAGGGCAGTTATGCCTCTATCTGGGCGACTGTCGGCGATTAGTCACTACACGGATGCCGGCCGG GTACTACGGGAGACAATGCG
Downstream 100 bases:
>100_bases GCAAACCAAACGGCCGAGGCGAATTCTTCAGGCGGAAAATGAGGGCGAGGAGACCACCTTTTTTGCGGGCGGTTCCTCCA TCGTGCCGTCCCAAAACCGT
Product: 2-deoxy-D-gluconate 3-dehydrogenase
Products: NA
Alternate protein names: 2-keto-3-deoxygluconate 5-dehydrogenase; 2-keto-3-deoxygluconate oxidoreductase; KDG oxidoreductase [H]
Number of amino acids: Translated: 252; Mature: 251
Protein sequence:
>252_residues MTSTFSLESRRIMVTGANTGIGQGIAVAAARAGAEVLGVGRSSMDESEKLVEAQGTSFTAISCDLADPAASSAMFDRAWE EHGPIDGLVNNAGIIRRVDAVDLTEADWDDVMDINLKTLFTLCQAFGRKLIAGGRRGKIVNVASVLSFQGGIRVASYTAS KHGVLGLTRVLACEWAGKGINVNAVAPGYIETNNTEALRNDPDRSDSILARIPAGRWGRPEDIGDAAVFLLAPASDYMHG AVIPVDGGWLAR
Sequences:
>Translated_252_residues MTSTFSLESRRIMVTGANTGIGQGIAVAAARAGAEVLGVGRSSMDESEKLVEAQGTSFTAISCDLADPAASSAMFDRAWE EHGPIDGLVNNAGIIRRVDAVDLTEADWDDVMDINLKTLFTLCQAFGRKLIAGGRRGKIVNVASVLSFQGGIRVASYTAS KHGVLGLTRVLACEWAGKGINVNAVAPGYIETNNTEALRNDPDRSDSILARIPAGRWGRPEDIGDAAVFLLAPASDYMHG AVIPVDGGWLAR >Mature_251_residues TSTFSLESRRIMVTGANTGIGQGIAVAAARAGAEVLGVGRSSMDESEKLVEAQGTSFTAISCDLADPAASSAMFDRAWEE HGPIDGLVNNAGIIRRVDAVDLTEADWDDVMDINLKTLFTLCQAFGRKLIAGGRRGKIVNVASVLSFQGGIRVASYTASK HGVLGLTRVLACEWAGKGINVNAVAPGYIETNNTEALRNDPDRSDSILARIPAGRWGRPEDIGDAAVFLLAPASDYMHGA VIPVDGGWLAR
Specific function: Catalyzes the reduction of 2,5-diketo-3-deoxygluconate (DKII or 4,6-dihydroxy-2,5-dioxohexanoate) into 2-keto-3- deoxygluconate (KDG or 2-dehydro-3-deoxygluconate) with a concomitant oxidation of NADH [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI7705925, Length=245, Percent_Identity=34.6938775510204, Blast_Score=132, Evalue=3e-31, Organism=Homo sapiens, GI15277342, Length=255, Percent_Identity=32.9411764705882, Blast_Score=126, Evalue=2e-29, Organism=Homo sapiens, GI32483357, Length=255, Percent_Identity=31.3725490196078, Blast_Score=112, Evalue=3e-25, Organism=Homo sapiens, GI40254992, Length=236, Percent_Identity=33.8983050847458, Blast_Score=110, Evalue=1e-24, Organism=Homo sapiens, GI66933014, Length=250, Percent_Identity=30.8, Blast_Score=106, Evalue=3e-23, Organism=Homo sapiens, GI5031737, Length=244, Percent_Identity=30.327868852459, Blast_Score=104, Evalue=9e-23, Organism=Homo sapiens, GI19923817, Length=254, Percent_Identity=30.3149606299213, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI10190704, Length=251, Percent_Identity=31.4741035856574, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI33667109, Length=196, Percent_Identity=32.1428571428571, Blast_Score=92, Evalue=5e-19, Organism=Homo sapiens, GI126723750, Length=258, Percent_Identity=28.2945736434109, Blast_Score=88, Evalue=6e-18, Organism=Homo sapiens, GI31542939, Length=210, Percent_Identity=30.4761904761905, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI4503301, Length=204, Percent_Identity=26.9607843137255, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI109715829, Length=238, Percent_Identity=26.4705882352941, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI4504505, Length=196, Percent_Identity=29.5918367346939, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI59889578, Length=206, Percent_Identity=29.6116504854369, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI126723191, Length=188, Percent_Identity=30.3191489361702, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI4758504, Length=183, Percent_Identity=31.1475409836066, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI224922801, Length=179, Percent_Identity=31.8435754189944, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI20149619, Length=194, Percent_Identity=31.4432989690722, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI40807363, Length=191, Percent_Identity=27.7486910994764, Blast_Score=69, Evalue=6e-12, Organism=Escherichia coli, GI1789208, Length=252, Percent_Identity=53.968253968254, Blast_Score=272, Evalue=2e-74, Organism=Escherichia coli, GI87082160, Length=250, Percent_Identity=37.6, Blast_Score=177, Evalue=5e-46, Organism=Escherichia coli, GI1787335, Length=245, Percent_Identity=35.5102040816327, Blast_Score=152, Evalue=2e-38, Organism=Escherichia coli, GI1790717, Length=253, Percent_Identity=35.5731225296443, Blast_Score=150, Evalue=1e-37, Organism=Escherichia coli, GI87082100, Length=257, Percent_Identity=36.5758754863813, Blast_Score=134, Evalue=7e-33, Organism=Escherichia coli, GI1788459, Length=244, Percent_Identity=29.5081967213115, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI2367175, Length=244, Percent_Identity=32.7868852459016, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1787905, Length=251, Percent_Identity=32.6693227091633, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1789378, Length=249, Percent_Identity=30.5220883534137, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1786812, Length=251, Percent_Identity=30.2788844621514, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI2367365, Length=248, Percent_Identity=30.241935483871, Blast_Score=83, Evalue=1e-17, Organism=Escherichia coli, GI1789057, Length=181, Percent_Identity=27.6243093922652, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1787526, Length=190, Percent_Identity=30.5263157894737, Blast_Score=67, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17555706, Length=247, Percent_Identity=34.0080971659919, Blast_Score=132, Evalue=2e-31, Organism=Caenorhabditis elegans, GI115534694, Length=249, Percent_Identity=30.1204819277108, Blast_Score=125, Evalue=2e-29, Organism=Caenorhabditis elegans, GI25147288, Length=245, Percent_Identity=32.2448979591837, Blast_Score=116, Evalue=1e-26, Organism=Caenorhabditis elegans, GI17560676, Length=249, Percent_Identity=28.9156626506024, Blast_Score=113, Evalue=1e-25, Organism=Caenorhabditis elegans, GI71994600, Length=251, Percent_Identity=33.0677290836653, Blast_Score=105, Evalue=1e-23, Organism=Caenorhabditis elegans, GI71994604, Length=245, Percent_Identity=30.2040816326531, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17562910, Length=254, Percent_Identity=32.6771653543307, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17561272, Length=233, Percent_Identity=30.4721030042918, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17551412, Length=260, Percent_Identity=29.6153846153846, Blast_Score=94, Evalue=5e-20, Organism=Caenorhabditis elegans, GI17536651, Length=252, Percent_Identity=28.1746031746032, Blast_Score=94, Evalue=7e-20, Organism=Caenorhabditis elegans, GI17562906, Length=254, Percent_Identity=30.7086614173228, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17562904, Length=262, Percent_Identity=29.7709923664122, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17561402, Length=253, Percent_Identity=29.2490118577075, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17538182, Length=263, Percent_Identity=30.7984790874525, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17563726, Length=265, Percent_Identity=29.4339622641509, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17538480, Length=267, Percent_Identity=29.9625468164794, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17562908, Length=266, Percent_Identity=29.6992481203008, Blast_Score=91, Evalue=8e-19, Organism=Caenorhabditis elegans, GI17536025, Length=250, Percent_Identity=27.6, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17531453, Length=254, Percent_Identity=31.1023622047244, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI72000259, Length=255, Percent_Identity=28.6274509803922, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI193204405, Length=257, Percent_Identity=29.1828793774319, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17562990, Length=255, Percent_Identity=28.6274509803922, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17560150, Length=255, Percent_Identity=27.4509803921569, Blast_Score=85, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17559104, Length=254, Percent_Identity=27.1653543307087, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17560220, Length=255, Percent_Identity=28.6274509803922, Blast_Score=84, Evalue=9e-17, Organism=Caenorhabditis elegans, GI17544670, Length=264, Percent_Identity=30.3030303030303, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17564282, Length=192, Percent_Identity=28.6458333333333, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17538486, Length=255, Percent_Identity=27.0588235294118, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17560332, Length=256, Percent_Identity=27.734375, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17508895, Length=196, Percent_Identity=26.530612244898, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI193203117, Length=187, Percent_Identity=27.807486631016, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193203115, Length=187, Percent_Identity=27.807486631016, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71997099, Length=206, Percent_Identity=27.6699029126214, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17568967, Length=197, Percent_Identity=28.9340101522843, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17570069, Length=200, Percent_Identity=29, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17508651, Length=258, Percent_Identity=26.7441860465116, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=196, Percent_Identity=31.1224489795918, Blast_Score=89, Evalue=8e-19, Organism=Saccharomyces cerevisiae, GI6324126, Length=174, Percent_Identity=31.0344827586207, Blast_Score=77, Evalue=2e-15, Organism=Drosophila melanogaster, GI24639444, Length=244, Percent_Identity=34.4262295081967, Blast_Score=131, Evalue=5e-31, Organism=Drosophila melanogaster, GI23397609, Length=251, Percent_Identity=31.8725099601594, Blast_Score=115, Evalue=4e-26, Organism=Drosophila melanogaster, GI24643142, Length=243, Percent_Identity=32.5102880658436, Blast_Score=111, Evalue=5e-25, Organism=Drosophila melanogaster, GI21357041, Length=253, Percent_Identity=32.4110671936759, Blast_Score=108, Evalue=4e-24, Organism=Drosophila melanogaster, GI21355319, Length=243, Percent_Identity=29.2181069958848, Blast_Score=108, Evalue=4e-24, Organism=Drosophila melanogaster, GI28571526, Length=252, Percent_Identity=32.1428571428571, Blast_Score=106, Evalue=2e-23, Organism=Drosophila melanogaster, GI24644339, Length=251, Percent_Identity=31.0756972111554, Blast_Score=102, Evalue=2e-22, Organism=Drosophila melanogaster, GI17737361, Length=257, Percent_Identity=29.1828793774319, Blast_Score=78, Evalue=4e-15, Organism=Drosophila melanogaster, GI24644337, Length=193, Percent_Identity=30.5699481865285, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24641232, Length=251, Percent_Identity=29.0836653386454, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI21358495, Length=198, Percent_Identity=31.3131313131313, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI21357673, Length=249, Percent_Identity=28.1124497991968, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI18859837, Length=191, Percent_Identity=29.3193717277487, Blast_Score=66, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011286 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.127 [H]
Molecular weight: Translated: 26545; Mature: 26414
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSTFSLESRRIMVTGANTGIGQGIAVAAARAGAEVLGVGRSSMDESEKLVEAQGTSFTA CCCCEECCCCEEEEEECCCCCCCCHHHHHHHCCCCEEECCCCCCCHHHHHHHHCCCEEEE ISCDLADPAASSAMFDRAWEEHGPIDGLVNNAGIIRRVDAVDLTEADWDDVMDINLKTLF EEECCCCCCHHHHHHHHHHHHCCCCCHHCCCCCEEEEECCCCCCCCCCCCEEECCHHHHH TLCQAFGRKLIAGGRRGKIVNVASVLSFQGGIRVASYTASKHGVLGLTRVLACEWAGKGI HHHHHHHHHHHCCCCCCCEEEHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCE NVNAVAPGYIETNNTEALRNDPDRSDSILARIPAGRWGRPEDIGDAAVFLLAPASDYMHG EEEEECCCEEECCCCHHHCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEECCCHHCCC AVIPVDGGWLAR EEEEECCCCCCC >Mature Secondary Structure TSTFSLESRRIMVTGANTGIGQGIAVAAARAGAEVLGVGRSSMDESEKLVEAQGTSFTA CCCEECCCCEEEEEECCCCCCCCHHHHHHHCCCCEEECCCCCCCHHHHHHHHCCCEEEE ISCDLADPAASSAMFDRAWEEHGPIDGLVNNAGIIRRVDAVDLTEADWDDVMDINLKTLF EEECCCCCCHHHHHHHHHHHHCCCCCHHCCCCCEEEEECCCCCCCCCCCCEEECCHHHHH TLCQAFGRKLIAGGRRGKIVNVASVLSFQGGIRVASYTASKHGVLGLTRVLACEWAGKGI HHHHHHHHHHHCCCCCCCEEEHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCE NVNAVAPGYIETNNTEALRNDPDRSDSILARIPAGRWGRPEDIGDAAVFLLAPASDYMHG EEEEECCCEEECCCCHHHCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEECCCHHCCC AVIPVDGGWLAR EEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1766386 [H]