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The map label for this gene is ybiH [H]

Identifier: 110632490

GI number: 110632490

Start: 157472

End: 158179

Strand: Direct

Name: ybiH [H]

Synonym: Meso_0128

Alternate gene names: 110632490

Gene position: 157472-158179 (Clockwise)

Preceding gene: 110632483

Following gene: 110632491

Centisome position: 3.57

GC content: 64.41

Gene sequence:

>708_bases
ATGTCCGATGGAAAGCGCGCCGCACAGACGCAGGAAAAGCCGGCCAGACCAGCGGGTCCGCGCGAAAGGCTGCTCGAAGC
TGCAGTCCACGTCTTCGGCCGCTATGGCTTCGACGGCGCGTCGACGCGGATGCTCGCCGACGCGGCCGGCGTGAACCTTC
AGGCTATTCCCTATTATTTCGGCGGCAAGGAAGGGCTCTACATCGCCGTTGCCGAGCATATCGGCACTCTCATCTCCGCC
CATATCGCCGGGCTGCGCGAGACGGTGCGCGGGCGCCTGGAAGAAGCGGATCGGGAAGGCCCCCCGATCCAGAAAACAGA
AGCGCAGGCGCTTCTTACGAGCATCCTGCAAACCATGGCGGCGCTCTTCGTCAGCGACGAATCCGAGCCCTGGGCACGCT
TCCTCATTCGCGAGCAAATGGAGCCCACGGAAGCGTTCCAGCGTGTCTATGGCGGTGTCATGAGGCCCATGCTCGAAGTG
GCCGGCCGGCTTGTCGCCATTCTGCTTGACGAAGATCCCGCCGCGAACAACGTCAAGCTGCGGACCTTCGGACTGCTCGG
CGGCGTGATGGCCTTCCGTGTGGCGCGTGCCGCCGTCCTGGCCCAGCTTGGGTGGGCAGGATTCGGCGAGGTGGAAACCA
GGCAAGTGCAGCGCCTGGCCGCCGATCTCGTGGCCTCACTTAATAAGGAGTCGCGCCATGACGCGTAA

Upstream 100 bases:

>100_bases
GTAAATTTCCAACGCTGCGGACTGAAATTGTTTTCATTCGATTGACTTAATCATTCGATTAATTTAAGTTCGGAAAGATC
ATTCATAGAGGTGTTGACCC

Downstream 100 bases:

>100_bases
GCTGCCTCGCATTATCGCCCTTCTGGTGATTGTCGCGGGCGGCGCCGCAGCGGCTTGGTGGTACGACCTGCCTGCCCGTT
TCGGCTGGACACATGCGGAG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MSDGKRAAQTQEKPARPAGPRERLLEAAVHVFGRYGFDGASTRMLADAAGVNLQAIPYYFGGKEGLYIAVAEHIGTLISA
HIAGLRETVRGRLEEADREGPPIQKTEAQALLTSILQTMAALFVSDESEPWARFLIREQMEPTEAFQRVYGGVMRPMLEV
AGRLVAILLDEDPAANNVKLRTFGLLGGVMAFRVARAAVLAQLGWAGFGEVETRQVQRLAADLVASLNKESRHDA

Sequences:

>Translated_235_residues
MSDGKRAAQTQEKPARPAGPRERLLEAAVHVFGRYGFDGASTRMLADAAGVNLQAIPYYFGGKEGLYIAVAEHIGTLISA
HIAGLRETVRGRLEEADREGPPIQKTEAQALLTSILQTMAALFVSDESEPWARFLIREQMEPTEAFQRVYGGVMRPMLEV
AGRLVAILLDEDPAANNVKLRTFGLLGGVMAFRVARAAVLAQLGWAGFGEVETRQVQRLAADLVASLNKESRHDA
>Mature_234_residues
SDGKRAAQTQEKPARPAGPRERLLEAAVHVFGRYGFDGASTRMLADAAGVNLQAIPYYFGGKEGLYIAVAEHIGTLISAH
IAGLRETVRGRLEEADREGPPIQKTEAQALLTSILQTMAALFVSDESEPWARFLIREQMEPTEAFQRVYGGVMRPMLEVA
GRLVAILLDEDPAANNVKLRTFGLLGGVMAFRVARAAVLAQLGWAGFGEVETRQVQRLAADLVASLNKESRHDA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081783, Length=200, Percent_Identity=33, Blast_Score=111, Evalue=5e-26,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647
- InterPro:   IPR015292 [H]

Pfam domain/function: PF09209 DUF1956; PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 25557; Mature: 25425

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDGKRAAQTQEKPARPAGPRERLLEAAVHVFGRYGFDGASTRMLADAAGVNLQAIPYYF
CCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEECEEE
GGKEGLYIAVAEHIGTLISAHIAGLRETVRGRLEEADREGPPIQKTEAQALLTSILQTMA
CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
ALFVSDESEPWARFLIREQMEPTEAFQRVYGGVMRPMLEVAGRLVAILLDEDPAANNVKL
HHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCEEE
RTFGLLGGVMAFRVARAAVLAQLGWAGFGEVETRQVQRLAADLVASLNKESRHDA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SDGKRAAQTQEKPARPAGPRERLLEAAVHVFGRYGFDGASTRMLADAAGVNLQAIPYYF
CCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEECEEE
GGKEGLYIAVAEHIGTLISAHIAGLRETVRGRLEEADREGPPIQKTEAQALLTSILQTMA
CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
ALFVSDESEPWARFLIREQMEPTEAFQRVYGGVMRPMLEVAGRLVAILLDEDPAANNVKL
HHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCEEE
RTFGLLGGVMAFRVARAAVLAQLGWAGFGEVETRQVQRLAADLVASLNKESRHDA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8037924; 8905232; 9278503 [H]