| Definition | Helicobacter acinonychis str. Sheeba chromosome, complete genome. |
|---|---|
| Accession | NC_008229 |
| Length | 1,553,927 |
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The map label for this gene is uvrA [H]
Identifier: 109947475
GI number: 109947475
Start: 811634
End: 814459
Strand: Reverse
Name: uvrA [H]
Synonym: Hac_0927
Alternate gene names: 109947475
Gene position: 814459-811634 (Counterclockwise)
Preceding gene: 109947484
Following gene: 109947473
Centisome position: 52.41
GC content: 39.28
Gene sequence:
>2826_bases TTGCGAGATAAAACCATTATGGATAAAATCATTATTCAAGGGGCTAGGGAAAATAATCTCAAAAATATTTCTTTAGAAAT CCCCAAAAACCAATTTGTTGTTTTTACCGGATTGAGCGGATCGGGTAAATCCACTTTGGCGTTTGACACTTTATACGCTG AAGGGCAAAGGCGCTATTTAGAGAGTTTGTCTAGCTATGCAAGGCAATTTTTAGACAAAGTGGGTAAGCCTAATGTGGAT AAGATTGAAGGGCTAACCCCTGCGATCGCCATCGATCAAAAGACCACTTCTAAAAACCCTAGATCCACTGTAGGGACGAT CACTGAAATTTATGATTATTTAAGGTTGTTGTTTGCAAGGGTTGGGGAGCAATTTTGCCCCACATGTTTAGAGCCTATTA CCTCTATGAATGCGAGCGATATTATTTCTCAAATCTGTCATTTAGAAGAAAATTCTAAAATCATTATTCTAGCCCCTATC ATTAAGGATAAAAAAGGTGCATTTAGTGATAAATTAGAGAGCTTGCGTTTAAAGGGGTATGTGAGGGCTTTTGTTGATGG GGTGATGGTGCGTTTAGATGAAGAAATCCATTTACACAAAACCAAAAAACACACCATTGAAGCGGTGGTGGATAGGGTGG TTGTCAATAGTGAAAACGCTTCACGGATCGCTAGTGCGGTAGAAAAAGCCCTTAAAGAGAGCTATGGGGAATTAGAAGTG GAAATCTTACAAGACAATGCACCAAGTATTAGGAAGCATTACAGCGAGCATAAGGCATGCTTTAAGTGTAAGATGAGTTT TGAAGAATTAGAGCCTTTGAGTTTTTCATTCAATTCGCCTAAAGGGGCGTGCGAGAGCTGTTTGGGTTTGGGGACAAAAT TTAGCTTAGATGTTAGTAAGATTTTGGATCCTAACACGCCTTTAAATCAAGGGGCGATCAAGGTGATTTTTGGGTATAAC CGCAATTATTACGCTCAAATGTTTGAAGGCTTTTGTGTGCACAATGGCATTGACACCACGCTTTGTTTCAATGAATTGAA TAAAGAGCAACAAGACGCTCTTTTGTATGGGAATGGCACTGAAATTAGCTTTCATTTTAAAAATAGCCCTTTAAAACGCC CCTGGAAAGGCATTATCCAAATCGCTTATGACATGTTTAAAGAGCAAAAGGATTTGAGCGATTACATGAGCGAAAAAACC TGTCCTTCGTGTAAGGGGCATCGTTTGAAAGCGTCAAGTTTAAGCGTTCAAGTCGCTGGCTTGAAAATGGCGGATTTTTT AAATAAACCTATTGAAGAAGTCTATCACTTTTTTAATAATCCTACACATTTCAGTTATCTTAACGAGCAAGAAAAAAAGA TCGCTGATCCTATTTTAAAAGAAATTTTAGAAAGGGTGTTTTTTTTATACGATGTGGGGCTAGGGTATTTGACTTTAGGG AGGGATGCGCGAACGATTAGCGGAGGAGAGAGTCAAAGAATACGAATCGCTAGTCAAATAGGGAGTGGTTTGACAGGGGT TTTATATGTTTTAGATGAACCTAGCATTGGCTTGCATGAAAAAGATACGCTCAAACTCATTAACACCCTTAGGAATTTAC AAAAAAAGGGGAACACGCTCATTGTCGTAGAACATGATAAAGAGACGATTAAACATGCGGATTTTATTGTAGATATTGGG CCAAAGGCTGGAAGGCATGGGGGCGAAGTGGTCTTTAGTGGGAGCGTGAAAGAATTATTACAAAATAACCATTCTACCGC CCTATATCTCAACGGCACTAAAAAGATCGAGCGGCCTAAATTTGAACTCCCTAAAGAAAGGCATTTTTTAGAAATTAAGA ATGTCAATATCAATAACATTCAAAATTTAAGCGTTCAAATCCCCTTAAAACAATTAGTGTGCATTACTGGGGTGAGCGGG AGCGGTAAAAGCTCATTGATTTTACAAACCCTTTTACCTACGGCTCAAACCCTTTTAAACCATGCCAAAAAAGCTAAAAG CTTGAATGGGGTGGAGATTGTAGGTTTGGAGCATTTGGATAAAGTGATTTATTTAGATCAAGCCCCCATAGGCAAAACCC CACGAAGCAACCCTGCCACTTACACAGGAGTGATGGATGAAATTAGGATTTTATTTGCCGAGCAAAAAGAAGCTAAAATT TTAGGTTATAGTGCGAGCCGTTTTAGCTTTAATGTTAAGGGAGGGCGGTGTGAGAAATGCCAAGGCGATGGGGATATTAA AATAGAAATGCATTTCTTACCTAATGTGTTAGTCCAATGCGATAGCTGTAAGGGTGCTAAATACAACCCCCAAACTTTAG AAGTCAAGGTGAAAGGCAAATCCATTGCTGATGTGTTGAACATGAGCGTCGAAGAGGCTTATGAATTTTTTGCTAAATTC CCTAAAATCGCTGTGAAGTTAAAAACCCTTATAGATGTGGGATTAGGCTATATCACTTTAGGGCAAAACGCTACCACTTT AAGTGGGGGGGAGGCTCAAAGGATCAAATTGGCTAAAGAATTGAGTAAAAAAGACACAGGCAAAACCCTTTATATTTTAG ACGAACCCACCACCGGTTTGCATTTTGAAGATGTGAATCACCTCTTACAAGTTTTGCATTCTTTAGTGGTGTTAGGCAAT TCCATGCTAGTGATTGAGCATAATTTAGACATCATTAAAAACGCTGACTATATCATAGACATGGGGCCTGATGGGGGGGA TAAGGGCGGAAGAGTCATTGCGAGCGGCACGCCTTTAGAAGTCGCAAAAAATTGCGAAAAAACCCAAAGCTATACTGGAA AATTTTTAGCTTTAGAGTTAAAATAG
Upstream 100 bases:
>100_bases CTTATAAACAAGAAATGGTAATAAAACCATTCTTTTTGAAGTATAATAGCTCCTTTATAATCTACACTCTTTCATAATTT AAGGAAATTTAAGGAAACTC
Downstream 100 bases:
>100_bases CTTTGCATAGGTTTTGTTTGTTTTTTAATTTTAATGGTTGTTTGAGATTTTTAGGGTTCTAGTTGCTTGAGAAGTTGGGA ATAAAAAATAATATTTTGTT
Product: excinuclease ABC subunit A
Products: NA
Alternate protein names: UvrA protein; Excinuclease ABC subunit A [H]
Number of amino acids: Translated: 941; Mature: 941
Protein sequence:
>941_residues MRDKTIMDKIIIQGARENNLKNISLEIPKNQFVVFTGLSGSGKSTLAFDTLYAEGQRRYLESLSSYARQFLDKVGKPNVD KIEGLTPAIAIDQKTTSKNPRSTVGTITEIYDYLRLLFARVGEQFCPTCLEPITSMNASDIISQICHLEENSKIIILAPI IKDKKGAFSDKLESLRLKGYVRAFVDGVMVRLDEEIHLHKTKKHTIEAVVDRVVVNSENASRIASAVEKALKESYGELEV EILQDNAPSIRKHYSEHKACFKCKMSFEELEPLSFSFNSPKGACESCLGLGTKFSLDVSKILDPNTPLNQGAIKVIFGYN RNYYAQMFEGFCVHNGIDTTLCFNELNKEQQDALLYGNGTEISFHFKNSPLKRPWKGIIQIAYDMFKEQKDLSDYMSEKT CPSCKGHRLKASSLSVQVAGLKMADFLNKPIEEVYHFFNNPTHFSYLNEQEKKIADPILKEILERVFFLYDVGLGYLTLG RDARTISGGESQRIRIASQIGSGLTGVLYVLDEPSIGLHEKDTLKLINTLRNLQKKGNTLIVVEHDKETIKHADFIVDIG PKAGRHGGEVVFSGSVKELLQNNHSTALYLNGTKKIERPKFELPKERHFLEIKNVNINNIQNLSVQIPLKQLVCITGVSG SGKSSLILQTLLPTAQTLLNHAKKAKSLNGVEIVGLEHLDKVIYLDQAPIGKTPRSNPATYTGVMDEIRILFAEQKEAKI LGYSASRFSFNVKGGRCEKCQGDGDIKIEMHFLPNVLVQCDSCKGAKYNPQTLEVKVKGKSIADVLNMSVEEAYEFFAKF PKIAVKLKTLIDVGLGYITLGQNATTLSGGEAQRIKLAKELSKKDTGKTLYILDEPTTGLHFEDVNHLLQVLHSLVVLGN SMLVIEHNLDIIKNADYIIDMGPDGGDKGGRVIASGTPLEVAKNCEKTQSYTGKFLALELK
Sequences:
>Translated_941_residues MRDKTIMDKIIIQGARENNLKNISLEIPKNQFVVFTGLSGSGKSTLAFDTLYAEGQRRYLESLSSYARQFLDKVGKPNVD KIEGLTPAIAIDQKTTSKNPRSTVGTITEIYDYLRLLFARVGEQFCPTCLEPITSMNASDIISQICHLEENSKIIILAPI IKDKKGAFSDKLESLRLKGYVRAFVDGVMVRLDEEIHLHKTKKHTIEAVVDRVVVNSENASRIASAVEKALKESYGELEV EILQDNAPSIRKHYSEHKACFKCKMSFEELEPLSFSFNSPKGACESCLGLGTKFSLDVSKILDPNTPLNQGAIKVIFGYN RNYYAQMFEGFCVHNGIDTTLCFNELNKEQQDALLYGNGTEISFHFKNSPLKRPWKGIIQIAYDMFKEQKDLSDYMSEKT CPSCKGHRLKASSLSVQVAGLKMADFLNKPIEEVYHFFNNPTHFSYLNEQEKKIADPILKEILERVFFLYDVGLGYLTLG RDARTISGGESQRIRIASQIGSGLTGVLYVLDEPSIGLHEKDTLKLINTLRNLQKKGNTLIVVEHDKETIKHADFIVDIG PKAGRHGGEVVFSGSVKELLQNNHSTALYLNGTKKIERPKFELPKERHFLEIKNVNINNIQNLSVQIPLKQLVCITGVSG SGKSSLILQTLLPTAQTLLNHAKKAKSLNGVEIVGLEHLDKVIYLDQAPIGKTPRSNPATYTGVMDEIRILFAEQKEAKI LGYSASRFSFNVKGGRCEKCQGDGDIKIEMHFLPNVLVQCDSCKGAKYNPQTLEVKVKGKSIADVLNMSVEEAYEFFAKF PKIAVKLKTLIDVGLGYITLGQNATTLSGGEAQRIKLAKELSKKDTGKTLYILDEPTTGLHFEDVNHLLQVLHSLVVLGN SMLVIEHNLDIIKNADYIIDMGPDGGDKGGRVIASGTPLEVAKNCEKTQSYTGKFLALELK >Mature_941_residues MRDKTIMDKIIIQGARENNLKNISLEIPKNQFVVFTGLSGSGKSTLAFDTLYAEGQRRYLESLSSYARQFLDKVGKPNVD KIEGLTPAIAIDQKTTSKNPRSTVGTITEIYDYLRLLFARVGEQFCPTCLEPITSMNASDIISQICHLEENSKIIILAPI IKDKKGAFSDKLESLRLKGYVRAFVDGVMVRLDEEIHLHKTKKHTIEAVVDRVVVNSENASRIASAVEKALKESYGELEV EILQDNAPSIRKHYSEHKACFKCKMSFEELEPLSFSFNSPKGACESCLGLGTKFSLDVSKILDPNTPLNQGAIKVIFGYN RNYYAQMFEGFCVHNGIDTTLCFNELNKEQQDALLYGNGTEISFHFKNSPLKRPWKGIIQIAYDMFKEQKDLSDYMSEKT CPSCKGHRLKASSLSVQVAGLKMADFLNKPIEEVYHFFNNPTHFSYLNEQEKKIADPILKEILERVFFLYDVGLGYLTLG RDARTISGGESQRIRIASQIGSGLTGVLYVLDEPSIGLHEKDTLKLINTLRNLQKKGNTLIVVEHDKETIKHADFIVDIG PKAGRHGGEVVFSGSVKELLQNNHSTALYLNGTKKIERPKFELPKERHFLEIKNVNINNIQNLSVQIPLKQLVCITGVSG SGKSSLILQTLLPTAQTLLNHAKKAKSLNGVEIVGLEHLDKVIYLDQAPIGKTPRSNPATYTGVMDEIRILFAEQKEAKI LGYSASRFSFNVKGGRCEKCQGDGDIKIEMHFLPNVLVQCDSCKGAKYNPQTLEVKVKGKSIADVLNMSVEEAYEFFAKF PKIAVKLKTLIDVGLGYITLGQNATTLSGGEAQRIKLAKELSKKDTGKTLYILDEPTTGLHFEDVNHLLQVLHSLVVLGN SMLVIEHNLDIIKNADYIIDMGPDGGDKGGRVIASGTPLEVAKNCEKTQSYTGKFLALELK
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion h
COG id: COG0178
COG function: function code L; Excinuclease ATPase subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Escherichia coli, GI2367343, Length=947, Percent_Identity=51.2143611404435, Blast_Score=905, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR013815 - InterPro: IPR003593 - InterPro: IPR004602 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 104717; Mature: 104717
Theoretical pI: Translated: 8.28; Mature: 8.28
Prosite motif: PS00639 THIOL_PROTEASE_HIS ; PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRDKTIMDKIIIQGARENNLKNISLEIPKNQFVVFTGLSGSGKSTLAFDTLYAEGQRRYL CCCHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEHHHHHHHHHHHH ESLSSYARQFLDKVGKPNVDKIEGLTPAIAIDQKTTSKNPRSTVGTITEIYDYLRLLFAR HHHHHHHHHHHHHHCCCCCHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH VGEQFCPTCLEPITSMNASDIISQICHLEENSKIIILAPIIKDKKGAFSDKLESLRLKGY HCHHHCHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH VRAFVDGVMVRLDEEIHLHKTKKHTIEAVVDRVVVNSENASRIASAVEKALKESYGELEV HHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEE EILQDNAPSIRKHYSEHKACFKCKMSFEELEPLSFSFNSPKGACESCLGLGTKFSLDVSK EEEECCCCHHHHHHHHHHHHHHEECCHHHCCCCEEECCCCCHHHHHHHCCCCEEECCHHH ILDPNTPLNQGAIKVIFGYNRNYYAQMFEGFCVHNGIDTTLCFNELNKEQQDALLYGNGT HCCCCCCCCCCCEEEEEECCCCHHHHHHCCHHHCCCCCHHHHHHHHCCCCCCEEEEECCC EISFHFKNSPLKRPWKGIIQIAYDMFKEQKDLSDYMSEKTCPSCKGHRLKASSLSVQVAG EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCEEEEEEC LKMADFLNKPIEEVYHFFNNPTHFSYLNEQEKKIADPILKEILERVFFLYDVGLGYLTLG CHHHHHHCCHHHHHHHHHCCCCEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC RDARTISGGESQRIRIASQIGSGLTGVLYVLDEPSIGLHEKDTLKLINTLRNLQKKGNTL CCCCCCCCCCCCEEEEHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEE IVVEHDKETIKHADFIVDIGPKAGRHGGEVVFSGSVKELLQNNHSTALYLNGTKKIERPK EEEECCHHHHHHCCEEEECCCCCCCCCCCEEECCCHHHHHHCCCCEEEEECCCCCCCCCC FELPKERHFLEIKNVNINNIQNLSVQIPLKQLVCITGVSGSGKSSLILQTLLPTAQTLLN CCCCCCCCEEEEECCCCCCCCCEEEEECHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHH HAKKAKSLNGVEIVGLEHLDKVIYLDQAPIGKTPRSNPATYTGVMDEIRILFAEQKEAKI HHHHHCCCCCEEEEEHHHHCCEEEEECCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCEE LGYSASRFSFNVKGGRCEKCQGDGDIKIEMHFLPNVLVQCDSCKGAKYNPQTLEVKVKGK EEEECCEEEEECCCCCCCCCCCCCCEEEEEEECCCEEEEECCCCCCCCCCCEEEEEECCC SIADVLNMSVEEAYEFFAKFPKIAVKLKTLIDVGLGYITLGQNATTLSGGEAQRIKLAKE HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEECCCCCHHHHHHHHH LSKKDTGKTLYILDEPTTGLHFEDVNHLLQVLHSLVVLGNSMLVIEHNLDIIKNADYIID HHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEECCCEEEE MGPDGGDKGGRVIASGTPLEVAKNCEKTQSYTGKFLALELK ECCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEEEC >Mature Secondary Structure MRDKTIMDKIIIQGARENNLKNISLEIPKNQFVVFTGLSGSGKSTLAFDTLYAEGQRRYL CCCHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEHHHHHHHHHHHH ESLSSYARQFLDKVGKPNVDKIEGLTPAIAIDQKTTSKNPRSTVGTITEIYDYLRLLFAR HHHHHHHHHHHHHHCCCCCHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH VGEQFCPTCLEPITSMNASDIISQICHLEENSKIIILAPIIKDKKGAFSDKLESLRLKGY HCHHHCHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH VRAFVDGVMVRLDEEIHLHKTKKHTIEAVVDRVVVNSENASRIASAVEKALKESYGELEV HHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEE EILQDNAPSIRKHYSEHKACFKCKMSFEELEPLSFSFNSPKGACESCLGLGTKFSLDVSK EEEECCCCHHHHHHHHHHHHHHEECCHHHCCCCEEECCCCCHHHHHHHCCCCEEECCHHH ILDPNTPLNQGAIKVIFGYNRNYYAQMFEGFCVHNGIDTTLCFNELNKEQQDALLYGNGT HCCCCCCCCCCCEEEEEECCCCHHHHHHCCHHHCCCCCHHHHHHHHCCCCCCEEEEECCC EISFHFKNSPLKRPWKGIIQIAYDMFKEQKDLSDYMSEKTCPSCKGHRLKASSLSVQVAG EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCEEEEEEC LKMADFLNKPIEEVYHFFNNPTHFSYLNEQEKKIADPILKEILERVFFLYDVGLGYLTLG CHHHHHHCCHHHHHHHHHCCCCEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC RDARTISGGESQRIRIASQIGSGLTGVLYVLDEPSIGLHEKDTLKLINTLRNLQKKGNTL CCCCCCCCCCCCEEEEHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEE IVVEHDKETIKHADFIVDIGPKAGRHGGEVVFSGSVKELLQNNHSTALYLNGTKKIERPK EEEECCHHHHHHCCEEEECCCCCCCCCCCEEECCCHHHHHHCCCCEEEEECCCCCCCCCC FELPKERHFLEIKNVNINNIQNLSVQIPLKQLVCITGVSGSGKSSLILQTLLPTAQTLLN CCCCCCCCEEEEECCCCCCCCCEEEEECHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHH HAKKAKSLNGVEIVGLEHLDKVIYLDQAPIGKTPRSNPATYTGVMDEIRILFAEQKEAKI HHHHHCCCCCEEEEEHHHHCCEEEEECCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCEE LGYSASRFSFNVKGGRCEKCQGDGDIKIEMHFLPNVLVQCDSCKGAKYNPQTLEVKVKGK EEEECCEEEEECCCCCCCCCCCCCCEEEEEEECCCEEEEECCCCCCCCCCCEEEEEECCC SIADVLNMSVEEAYEFFAKFPKIAVKLKTLIDVGLGYITLGQNATTLSGGEAQRIKLAKE HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEECCCCCHHHHHHHHH LSKKDTGKTLYILDEPTTGLHFEDVNHLLQVLHSLVVLGNSMLVIEHNLDIIKNADYIID HHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEECCCEEEE MGPDGGDKGGRVIASGTPLEVAKNCEKTQSYTGKFLALELK ECCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9923682 [H]