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The map label for this gene is pal [H]

Identifier: 109947175

GI number: 109947175

Start: 519050

End: 519595

Strand: Direct

Name: pal [H]

Synonym: Hac_0588

Alternate gene names: 109947175

Gene position: 519050-519595 (Clockwise)

Preceding gene: 109947174

Following gene: 109947176

Centisome position: 33.4

GC content: 38.28

Gene sequence:

>546_bases
ATGAAAAAATTTTCTGCGTTTAGTTCTTTGTTGGCTTTGTTATTGGTGGTTGGTTGCAGTCATAAAATAGATAACAATAC
AGTGGCCGGTGATGTGAGCACTGGCGTTAAAGCCGTTCAAAACGCGCCTGTCAATACAGAGCCTGTTGTAGAAAAAGAAG
CACCTAAAGAAGATCTAGCTCCAGCGGTTGAGAAAAAACCGGCTATTGAGAGTGGGACTATTATTGCCTCTATTTATTTT
GATTTTGACAAATATGAGATCAAAGACTCCGATCAAGAAACTTTGGATGAGATCGTGCAAAAAGCTAAAGAAAACCACAT
GCAAGTGCTTTTAGAAGGCAATACCGATGAATTTGGCTCTAGCGAATACAATCAAGCGCTTGGCGTTAAAAGGACTTTGA
GCGTGAAAAACGCTTTAGTGATTAAAGGGGTAGAAAAAGACATGATTAAAACCATCAGTTTTGGTGAAATCAAACCCAAA
TGCATCCAAAAAACCAAAGAGTGTTATAAAGAAAACAGGAGAGTGGATGTCAAATTAGTGAAGTAA

Upstream 100 bases:

>100_bases
AATACAAGCCTTTGATTGGTAAGGTTAAATTAAGCGAATATGAGCTAATATTTTTGCTTATTATTTAGATTATTTAGATT
TTATTTTGGGAGAATGTTTA

Downstream 100 bases:

>100_bases
CTTGGGAATGAATAGGCTTTTTTTAATCCCTTTTATCGCTCCCTTTTTTCTCAATGGGGAGCCTTCAGCGTTTGATTTGC
AAAGCGGAGCGACCAAAAAG

Product: peptidoglycan-associated lipoprotein precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MKKFSAFSSLLALLLVVGCSHKIDNNTVAGDVSTGVKAVQNAPVNTEPVVEKEAPKEDLAPAVEKKPAIESGTIIASIYF
DFDKYEIKDSDQETLDEIVQKAKENHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNALVIKGVEKDMIKTISFGEIKPK
CIQKTKECYKENRRVDVKLVK

Sequences:

>Translated_181_residues
MKKFSAFSSLLALLLVVGCSHKIDNNTVAGDVSTGVKAVQNAPVNTEPVVEKEAPKEDLAPAVEKKPAIESGTIIASIYF
DFDKYEIKDSDQETLDEIVQKAKENHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNALVIKGVEKDMIKTISFGEIKPK
CIQKTKECYKENRRVDVKLVK
>Mature_181_residues
MKKFSAFSSLLALLLVVGCSHKIDNNTVAGDVSTGVKAVQNAPVNTEPVVEKEAPKEDLAPAVEKKPAIESGTIIASIYF
DFDKYEIKDSDQETLDEIVQKAKENHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNALVIKGVEKDMIKTISFGEIKPK
CIQKTKECYKENRRVDVKLVK

Specific function: Structural protein that may protect the integrity of the bacterium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=99, Percent_Identity=38.3838383838384, Blast_Score=74, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 20020; Mature: 20020

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFSAFSSLLALLLVVGCSHKIDNNTVAGDVSTGVKAVQNAPVNTEPVVEKEAPKEDLA
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHC
PAVEKKPAIESGTIIASIYFDFDKYEIKDSDQETLDEIVQKAKENHMQVLLEGNTDEFGS
HHHHCCCCCCCCCEEEEEEECCCCEECCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCC
SEYNQALGVKRTLSVKNALVIKGVEKDMIKTISFGEIKPKCIQKTKECYKENRRVDVKLV
CHHHHHHCCHHHHHHCCEEEEECCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEE
K
C
>Mature Secondary Structure
MKKFSAFSSLLALLLVVGCSHKIDNNTVAGDVSTGVKAVQNAPVNTEPVVEKEAPKEDLA
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHC
PAVEKKPAIESGTIIASIYFDFDKYEIKDSDQETLDEIVQKAKENHMQVLLEGNTDEFGS
HHHHCCCCCCCCCEEEEEEECCCCEECCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCC
SEYNQALGVKRTLSVKNALVIKGVEKDMIKTISFGEIKPKCIQKTKECYKENRRVDVKLV
CHHHHHHCCHHHHHHCCEEEEECCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEE
K
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1447140 [H]