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The map label for this gene is tolB [H]

Identifier: 109947174

GI number: 109947174

Start: 517718

End: 518971

Strand: Direct

Name: tolB [H]

Synonym: Hac_0587

Alternate gene names: 109947174

Gene position: 517718-518971 (Clockwise)

Preceding gene: 109947173

Following gene: 109947175

Centisome position: 33.32

GC content: 38.84

Gene sequence:

>1254_bases
ATGAAGCATTTATGGCTTTTTTTAATGGGTTCTGTATGGCTTTTTGCAATAGACAAGACGCTAGATATTGTTAAAACCAT
TCAAAAGCTTCCTAAAATTGAAGTGCGCTACTCCATAGACAACGATGCCAATTACGCTTTAAAATTGCATGAAGTCTTAA
TCAATGATTTAAAGACCAGCCAGCATTTTGATGTTTCTGAAAACAAGGAGCAAAGCGCTATCAATTATGCGGATCTCAAG
AATAAAAAATTCCAACTCGTAGCGCTTGTGAGCGTGGCGGTGGAAAACGGCAATAAAATTTCACGATTGAGGCTTTATGA
TGTCAATACAAGCACCCTCACTAAAACTTTTGACTACCCAATTTTAAGCGCTGATCTATACCCTTTTACAGCACACAACA
TGGCGATTGCGGTGAATGATTACCTCAAAGCCCCTTCTATCGCCTGGATGAAGCGTTTTATTGTGTTTTCTAAATATATC
AGTTCAGGGGTTACGAGCATTGCGTTAGCGGATTACACGATGCGCTATCAAAAAGAAATCATCAAAAATAACCGACTCAA
TATTTTTCCTAAATGGGCGAACGCCGAGCAAACGGAGTTTTACTACACGCAATATGGCGAAAGAAAGCCCATGATTTTAA
AATACAATATCCAAAAAGGCACGCACCAAAGTATCGCTAGCTCTCAAGGGATGGCGGTGGTTTCTAGCGTGAGCTCTGAT
GGCTCTAAAATCTTAATGTCTTTAGCCCCTAAAGGCCAACCGGATGTTTATTTATACGATGTGCATAAAAAAACAAGCAC
TAAAATAACGCGCTACCCAGGGATAGATGTTTCAGGAGTGTTTCTTGAAGATGACAAGTCTATGGCTTTTGTTTCGGATA
GATCAGGCTATCCTAATATCTATATGAAAAAATTGGGGTTAAACGAGAGCGCGGAGCAACTCGTTTATGAGGGGAAAAGC
AATGAATCCATTGACGCTTATAAGGATGGCATTGTGTATGTGAGTAGGGAAAATCTTAATGAATTTGGCAAAACGGTGTT
CAATTTGAATTTAATCACGCTAAATAGCAAGTATATCCGTAGGCTTACCGTGAATGGCGTGAATCAAATGCCTCGTTTTT
CTGTGGATGGGAAAAATATCATGTATATTAAAAAGACACCCCAAGAATACGCTATGGGGCTTATTTTGCTAGACTATAAT
CAAAGTTTTCTATTCCCCTTAAAGAATGTGAAAATACAAGCCTTTGATTGGTAA

Upstream 100 bases:

>100_bases
TCACCACCCTTTTAGACGATTTAAAGAAAGTGGATTTCCCTCCATATCCGGGAGAAAACATGATTTCTATCAAAGTTAAT
TTCACCACCAAGGAAGAACA

Downstream 100 bases:

>100_bases
GGTTAAATTAAGCGAATATGAGCTAATATTTTTGCTTATTATTTAGATTATTTAGATTTTATTTTGGGAGAATGTTTAAT
GAAAAAATTTTCTGCGTTTA

Product: translocation protein TolB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 417; Mature: 417

Protein sequence:

>417_residues
MKHLWLFLMGSVWLFAIDKTLDIVKTIQKLPKIEVRYSIDNDANYALKLHEVLINDLKTSQHFDVSENKEQSAINYADLK
NKKFQLVALVSVAVENGNKISRLRLYDVNTSTLTKTFDYPILSADLYPFTAHNMAIAVNDYLKAPSIAWMKRFIVFSKYI
SSGVTSIALADYTMRYQKEIIKNNRLNIFPKWANAEQTEFYYTQYGERKPMILKYNIQKGTHQSIASSQGMAVVSSVSSD
GSKILMSLAPKGQPDVYLYDVHKKTSTKITRYPGIDVSGVFLEDDKSMAFVSDRSGYPNIYMKKLGLNESAEQLVYEGKS
NESIDAYKDGIVYVSRENLNEFGKTVFNLNLITLNSKYIRRLTVNGVNQMPRFSVDGKNIMYIKKTPQEYAMGLILLDYN
QSFLFPLKNVKIQAFDW

Sequences:

>Translated_417_residues
MKHLWLFLMGSVWLFAIDKTLDIVKTIQKLPKIEVRYSIDNDANYALKLHEVLINDLKTSQHFDVSENKEQSAINYADLK
NKKFQLVALVSVAVENGNKISRLRLYDVNTSTLTKTFDYPILSADLYPFTAHNMAIAVNDYLKAPSIAWMKRFIVFSKYI
SSGVTSIALADYTMRYQKEIIKNNRLNIFPKWANAEQTEFYYTQYGERKPMILKYNIQKGTHQSIASSQGMAVVSSVSSD
GSKILMSLAPKGQPDVYLYDVHKKTSTKITRYPGIDVSGVFLEDDKSMAFVSDRSGYPNIYMKKLGLNESAEQLVYEGKS
NESIDAYKDGIVYVSRENLNEFGKTVFNLNLITLNSKYIRRLTVNGVNQMPRFSVDGKNIMYIKKTPQEYAMGLILLDYN
QSFLFPLKNVKIQAFDW
>Mature_417_residues
MKHLWLFLMGSVWLFAIDKTLDIVKTIQKLPKIEVRYSIDNDANYALKLHEVLINDLKTSQHFDVSENKEQSAINYADLK
NKKFQLVALVSVAVENGNKISRLRLYDVNTSTLTKTFDYPILSADLYPFTAHNMAIAVNDYLKAPSIAWMKRFIVFSKYI
SSGVTSIALADYTMRYQKEIIKNNRLNIFPKWANAEQTEFYYTQYGERKPMILKYNIQKGTHQSIASSQGMAVVSSVSSD
GSKILMSLAPKGQPDVYLYDVHKKTSTKITRYPGIDVSGVFLEDDKSMAFVSDRSGYPNIYMKKLGLNESAEQLVYEGKS
NESIDAYKDGIVYVSRENLNEFGKTVFNLNLITLNSKYIRRLTVNGVNQMPRFSVDGKNIMYIKKTPQEYAMGLILLDYN
QSFLFPLKNVKIQAFDW

Specific function: Involved in the tonB-independent uptake of proteins [H]

COG id: COG0823

COG function: function code U; Periplasmic component of the Tol biopolymer transport system

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tolB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011659
- InterPro:   IPR014167
- InterPro:   IPR007195
- InterPro:   IPR015943 [H]

Pfam domain/function: PF07676 PD40; PF04052 TolB_N [H]

EC number: NA

Molecular weight: Translated: 47761; Mature: 47761

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: PS00284 SERPIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHLWLFLMGSVWLFAIDKTLDIVKTIQKLPKIEVRYSIDNDANYALKLHEVLINDLKTS
CCEEEEEHHHHHEEEEEHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEHHHHHHHHHCCC
QHFDVSENKEQSAINYADLKNKKFQLVALVSVAVENGNKISRLRLYDVNTSTLTKTFDYP
CCCCCCCCCCCCCEEHHHCCCCCEEEEEEEEEEECCCCEEEEEEEEECCCCCEEEECCCC
ILSADLYPFTAHNMAIAVNDYLKAPSIAWMKRFIVFSKYISSGVTSIALADYTMRYQKEI
EEECCCCEEEECCEEEEEECHHCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHH
IKNNRLNIFPKWANAEQTEFYYTQYGERKPMILKYNIQKGTHQSIASSQGMAVVSSVSSD
HCCCCEEEEECCCCCCCCEEEEEECCCCCCEEEEEECCCCCHHHHHCCCCEEEEEECCCC
GSKILMSLAPKGQPDVYLYDVHKKTSTKITRYPGIDVSGVFLEDDKSMAFVSDRSGYPNI
CCEEEEEECCCCCCCEEEEEECCCCCCEEEECCCCCEEEEEEECCCCEEEEECCCCCCCE
YMKKLGLNESAEQLVYEGKSNESIDAYKDGIVYVSRENLNEFGKTVFNLNLITLNSKYIR
EEEECCCCCCHHHHEECCCCCCCCHHHCCCEEEEECCCHHHHCCEEEEEEEEEECHHHEE
RLTVNGVNQMPRFSVDGKNIMYIKKTPQEYAMGLILLDYNQSFLFPLKNVKIQAFDW
EEEECCCCCCCCEECCCCEEEEEEECCHHHCEEEEEEECCCCEEEEECCCEEEEECC
>Mature Secondary Structure
MKHLWLFLMGSVWLFAIDKTLDIVKTIQKLPKIEVRYSIDNDANYALKLHEVLINDLKTS
CCEEEEEHHHHHEEEEEHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEHHHHHHHHHCCC
QHFDVSENKEQSAINYADLKNKKFQLVALVSVAVENGNKISRLRLYDVNTSTLTKTFDYP
CCCCCCCCCCCCCEEHHHCCCCCEEEEEEEEEEECCCCEEEEEEEEECCCCCEEEECCCC
ILSADLYPFTAHNMAIAVNDYLKAPSIAWMKRFIVFSKYISSGVTSIALADYTMRYQKEI
EEECCCCEEEECCEEEEEECHHCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHH
IKNNRLNIFPKWANAEQTEFYYTQYGERKPMILKYNIQKGTHQSIASSQGMAVVSSVSSD
HCCCCEEEEECCCCCCCCEEEEEECCCCCCEEEEEECCCCCHHHHHCCCCEEEEEECCCC
GSKILMSLAPKGQPDVYLYDVHKKTSTKITRYPGIDVSGVFLEDDKSMAFVSDRSGYPNI
CCEEEEEECCCCCCCEEEEEECCCCCCEEEECCCCCEEEEEEECCCCEEEEECCCCCCCE
YMKKLGLNESAEQLVYEGKSNESIDAYKDGIVYVSRENLNEFGKTVFNLNLITLNSKYIR
EEEECCCCCCHHHHEECCCCCCCCHHHCCCEEEEECCCHHHHCCEEEEEEEEEECHHHEE
RLTVNGVNQMPRFSVDGKNIMYIKKTPQEYAMGLILLDYNQSFLFPLKNVKIQAFDW
EEEECCCCCCCCEECCCCEEEEEEECCHHHCEEEEEEECCCCEEEEECCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA