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The map label for this gene is rfaC [H]

Identifier: 109947130

GI number: 109947130

Start: 461722

End: 462732

Strand: Direct

Name: rfaC [H]

Synonym: Hac_0537

Alternate gene names: 109947130

Gene position: 461722-462732 (Clockwise)

Preceding gene: 109947129

Following gene: 109947131

Centisome position: 29.71

GC content: 36.0

Gene sequence:

>1011_bases
TTGAAAATAGCGATTGTAAGGCTTTCAGCGCTTGGGGATATTATCGTGAGCGCGGTGTTTTTAGCGATGATTAAAGAGTG
TTTTACTAACGCTCAAATAGAATGGTTTGTAGATGAAAGATTTAGCACGATTTTAGAGCATTCCCCTTATATTGATAAAT
TACACCCTATCGCTTTAAAAAGCACGCTCAAAAGCTTTAACCCTTTGAAGATTTTCAAACTTTTTAAATCTTTAAGGGCT
TATGAATATGATATAATCATTGACATGCAAGGTTTGATCAAATCCGCTATCATCACGCAATGTTTAAAAGCCCCTAAAAA
AGTCGGCTTTGATTATGCTTCAGCTAGAGAGGGTTTGAGCGCGTTGTTTTATTCGCAAAAAGTTTCTATCGCTTATGATG
AGTCTATTTTAAAGCGCAATTTCACGCTTATTTCTCAAGCCCTAAACTTGCCTAAAAAAGAGATTTCAGAGAGTTTAACC
TCTAGGGCTAAAGTGTTTTCTTATCAAAATTCTTCACAAATCAACGCATTAAATTTGAATGAAAATAAGCCTAAAATCCT
TTTTGTTTTAGAAACTTCTAAGACTAATAAAACTTACCCCATAGAGCGCTTTAAAGAGTTAGCGCTGATGCTAGAAAGCG
TTCAAATTTGCTTGTTATGGCATGCGGATGAAAAAAAGGCGGTTGCACTTTATTGCACTTTAAAAAACCAATGCGATGTT
TTATTGCTCCCTAAACTCACTTTAAACGAAGTTAAGGCGTTGCTTTTTAGAATGGATTTAATTATTGGGGGCGATACGGG
TATTACGCATTTGGCATGGGCGTTACAAAAAGCCAGTATCACCCTTTATGGAAACACCCCTATGGAGCGCTTTAAATTGG
AAAGTCCGATCAATGTTTCACTCACCGGTAATTCAAACGCCAGCTATCATAAAAAGGATTTTTCTATCCAAAATATAGAG
CCTGAACGCATTAAAGAATGCGTTTTAAACCTTTTAAAGGAGAAAGAATGA

Upstream 100 bases:

>100_bases
AAAAAAACAAGCTTGTGATCCACTCTAATGATGCACTTTATTTGGCTAAAGAAATGCTGCCTAAACTCATTAAGCCCATT
CCTTTGATGATAGAGTTTGC

Downstream 100 bases:

>100_bases
CTTATAAAGAACGACTCATACATGAAAAAATATTAAACAAAGACGACAAGGGTTTTAAAACAGAGTTGCGCATTTTGAGC
ATTTTTATCGTGGAATTTTT

Product: lipopolysaccharide heptosyltransferase-1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MKIAIVRLSALGDIIVSAVFLAMIKECFTNAQIEWFVDERFSTILEHSPYIDKLHPIALKSTLKSFNPLKIFKLFKSLRA
YEYDIIIDMQGLIKSAIITQCLKAPKKVGFDYASAREGLSALFYSQKVSIAYDESILKRNFTLISQALNLPKKEISESLT
SRAKVFSYQNSSQINALNLNENKPKILFVLETSKTNKTYPIERFKELALMLESVQICLLWHADEKKAVALYCTLKNQCDV
LLLPKLTLNEVKALLFRMDLIIGGDTGITHLAWALQKASITLYGNTPMERFKLESPINVSLTGNSNASYHKKDFSIQNIE
PERIKECVLNLLKEKE

Sequences:

>Translated_336_residues
MKIAIVRLSALGDIIVSAVFLAMIKECFTNAQIEWFVDERFSTILEHSPYIDKLHPIALKSTLKSFNPLKIFKLFKSLRA
YEYDIIIDMQGLIKSAIITQCLKAPKKVGFDYASAREGLSALFYSQKVSIAYDESILKRNFTLISQALNLPKKEISESLT
SRAKVFSYQNSSQINALNLNENKPKILFVLETSKTNKTYPIERFKELALMLESVQICLLWHADEKKAVALYCTLKNQCDV
LLLPKLTLNEVKALLFRMDLIIGGDTGITHLAWALQKASITLYGNTPMERFKLESPINVSLTGNSNASYHKKDFSIQNIE
PERIKECVLNLLKEKE
>Mature_336_residues
MKIAIVRLSALGDIIVSAVFLAMIKECFTNAQIEWFVDERFSTILEHSPYIDKLHPIALKSTLKSFNPLKIFKLFKSLRA
YEYDIIIDMQGLIKSAIITQCLKAPKKVGFDYASAREGLSALFYSQKVSIAYDESILKRNFTLISQALNLPKKEISESLT
SRAKVFSYQNSSQINALNLNENKPKILFVLETSKTNKTYPIERFKELALMLESVQICLLWHADEKKAVALYCTLKNQCDV
LLLPKLTLNEVKALLFRMDLIIGGDTGITHLAWALQKASITLYGNTPMERFKLESPINVSLTGNSNASYHKKDFSIQNIE
PERIKECVLNLLKEKE

Specific function: Heptose transfer to the lipopolysaccharide core. It transfers the innnermost heptose to [4'-P](3-deoxy-D-manno- octulosonic acid)2-IVA [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790051, Length=295, Percent_Identity=29.1525423728814, Blast_Score=122, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011908 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.4.1.-

Molecular weight: Translated: 38181; Mature: 38181

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIAIVRLSALGDIIVSAVFLAMIKECFTNAQIEWFVDERFSTILEHSPYIDKLHPIALK
CEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCCHHHHCHHHHH
STLKSFNPLKIFKLFKSLRAYEYDIIIDMQGLIKSAIITQCLKAPKKVGFDYASAREGLS
HHHHCCCHHHHHHHHHHHHHEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
ALFYSQKVSIAYDESILKRNFTLISQALNLPKKEISESLTSRAKVFSYQNSSQINALNLN
HHHHHCCEEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEECCCCCEEEEECC
ENKPKILFVLETSKTNKTYPIERFKELALMLESVQICLLWHADEKKAVALYCTLKNQCDV
CCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCEEEEEEECCCCCEEEEEEEECCCCCE
LLLPKLTLNEVKALLFRMDLIIGGDTGITHLAWALQKASITLYGNTPMERFKLESPINVS
EEECCCCHHHHHHHHHHHHHEECCCCCHHHHHHHHHHCEEEEEECCCHHHHCCCCCCEEE
LTGNSNASYHKKDFSIQNIEPERIKECVLNLLKEKE
EECCCCCCEECCCCCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKIAIVRLSALGDIIVSAVFLAMIKECFTNAQIEWFVDERFSTILEHSPYIDKLHPIALK
CEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCCHHHHCHHHHH
STLKSFNPLKIFKLFKSLRAYEYDIIIDMQGLIKSAIITQCLKAPKKVGFDYASAREGLS
HHHHCCCHHHHHHHHHHHHHEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
ALFYSQKVSIAYDESILKRNFTLISQALNLPKKEISESLTSRAKVFSYQNSSQINALNLN
HHHHHCCEEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEECCCCCEEEEECC
ENKPKILFVLETSKTNKTYPIERFKELALMLESVQICLLWHADEKKAVALYCTLKNQCDV
CCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCEEEEEEECCCCCEEEEEEEECCCCCE
LLLPKLTLNEVKALLFRMDLIIGGDTGITHLAWALQKASITLYGNTPMERFKLESPINVS
EEECCCCHHHHHHHHHHHHHEECCCCCHHHHHHHHHHCEEEEEECCCHHHHCCCCCCEEE
LTGNSNASYHKKDFSIQNIEPERIKECVLNLLKEKE
EECCCCCCEECCCCCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1527014; 11677609; 1657881 [H]