Definition Helicobacter acinonychis str. Sheeba chromosome, complete genome.
Accession NC_008229
Length 1,553,927

Click here to switch to the map view.

The map label for this gene is 109947088

Identifier: 109947088

GI number: 109947088

Start: 433155

End: 433574

Strand: Direct

Name: 109947088

Synonym: Hac_0491

Alternate gene names: NA

Gene position: 433155-433574 (Clockwise)

Preceding gene: 109947074

Following gene: 109947089

Centisome position: 27.87

GC content: 37.14

Gene sequence:

>420_bases
ATGAGTTTGCAAGCGCTAAACACACAAGATTCTGTAATGGCTCAACCCTTACTTATCCATGCCTTTTTTGCCGCCTTGCT
CGCCCTAGCTTTTATCATCAATCTTTACACCCTTTTTAGAGAGAAGAATTTGATCCAATTAAACCGAAAAATCTATCTTG
TCATGCCTGCGATTTATATCCTTTTAAGCATCGCTTTTTTGAGCGGGATTTTTGTTTGGGCGATGCAACAATTCGCTTTT
TCTTTTAAGGTGATTGTCATGCTTTTGGGGTCATTGTCGGTGCTTATAGCAGAAATCAAACGCCATAAAAGCGCGAAATT
CGCCATCACTAAAAAAGAACGGATGGAAGCTTATATTAAAAAAGCTAAAATCCTGTATTTTTTAGAAACGATTCTTATCA
TTGTGTTAATGGTAGTTTGA

Upstream 100 bases:

>100_bases
TTTGGGCTGTTAAGGTTTTCTTGGGCTAAATTCATTGTTGCATGATAGAATAAAAGGCTTAATCAAACATAAATCACTAA
AAGGAAATTTATACTTAAAG

Downstream 100 bases:

>100_bases
ATGCGTTTTGTCTATCACCCTTTAGCCAAAGAGCCTACTTTAAAAATAGAGGGCGAAAGTTATACGCATTTATACCGTTC
AAGGCGCATAAAAAGTGCGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 139; Mature: 138

Protein sequence:

>139_residues
MSLQALNTQDSVMAQPLLIHAFFAALLALAFIINLYTLFREKNLIQLNRKIYLVMPAIYILLSIAFLSGIFVWAMQQFAF
SFKVIVMLLGSLSVLIAEIKRHKSAKFAITKKERMEAYIKKAKILYFLETILIIVLMVV

Sequences:

>Translated_139_residues
MSLQALNTQDSVMAQPLLIHAFFAALLALAFIINLYTLFREKNLIQLNRKIYLVMPAIYILLSIAFLSGIFVWAMQQFAF
SFKVIVMLLGSLSVLIAEIKRHKSAKFAITKKERMEAYIKKAKILYFLETILIIVLMVV
>Mature_138_residues
SLQALNTQDSVMAQPLLIHAFFAALLALAFIINLYTLFREKNLIQLNRKIYLVMPAIYILLSIAFLSGIFVWAMQQFAFS
FKVIVMLLGSLSVLIAEIKRHKSAKFAITKKERMEAYIKKAKILYFLETILIIVLMVV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15931; Mature: 15800

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLQALNTQDSVMAQPLLIHAFFAALLALAFIINLYTLFREKNLIQLNRKIYLVMPAIYI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
LLSIAFLSGIFVWAMQQFAFSFKVIVMLLGSLSVLIAEIKRHKSAKFAITKKERMEAYIK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
KAKILYFLETILIIVLMVV
HHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
SLQALNTQDSVMAQPLLIHAFFAALLALAFIINLYTLFREKNLIQLNRKIYLVMPAIYI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
LLSIAFLSGIFVWAMQQFAFSFKVIVMLLGSLSVLIAEIKRHKSAKFAITKKERMEAYIK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
KAKILYFLETILIIVLMVV
HHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA