Click here to switch to the map view.

The map label for this gene is 108812381

Identifier: 108812381

GI number: 108812381

Start: 2504979

End: 2505785

Strand: Reverse

Name: 108812381

Synonym: YPN_2220

Alternate gene names: NA

Gene position: 2505785-2504979 (Counterclockwise)

Preceding gene: 108812382

Following gene: 108812380

Centisome position: 55.26

GC content: 45.23

Gene sequence:

>807_bases
ATGAATACCACGAATTTAACTGAGTTATTAAAAAGCGCGTCTTTAACCGAAATGCTGGCCGATGTCATTGCTACGATAAA
AGCTAAACCAACGGACACCGATACGCGAGAACTGTTATTCAAACTCTATTGTATTGATGGTTCATGGCAAAAAGCCCTAT
TGCAGCTTGAAACATTGACACAGCTTTTACCTGAGTTCACCAAACAGGCTGAACTCTATAAAAATCTGATATTGAGTGAG
AAAATGCGTGATGAAGTGCTGGCAGGCAAACGCAGCCCTGGTACATTGGGTAACGACCTGCCTGAATGGGTAGCCTTGTT
GCAACAAGCTAATCAACTCCACCATGATGGCGATCATCAGCAAAGTGAGGCCCTCCGTGAACAGGCTCTGCAACAGGCAC
CGGAAAGTATCGGAGAGAGTGCTGCGACAGGCTGCTTCGCTTGGATTGCTGACAGTGATGGGCGCATGGGGCCTGTTTGT
GAGTTTATTAGCGCCGGCGGTTACCGTTGGATCCCGTTTGCAGAGATACAATCACTCACTGTTTCCAAACCTAAAAATAT
TACAGACCTGATATGGGCGCCGGCACAGGTTAAAGTAAAGGATAAAGTTTGGTACGGTTATATACCTGCCCGCTATCCAC
TGACACCTGAAACAGACAATGAAACTAAACTGGGTCTTAAAACAGAATGGCATCAACCGACTGACTCACTTTATATTGGG
GCAGGGCGGAAAATGTTTATCACCGACCAAGGTGAGCATGCGCTGTTTGATATTGAAGAGATTGTATTTGAGATAGATTG
TATTTGA

Upstream 100 bases:

>100_bases
TTTATAACAAAAGAAAAAAACAGTGTGCCTTCGCTCATGTTTCAGGAGCTCTACAAGCTAGGGCTGGACAGCCATCTATA
AATACGGATAAAACAAGATA

Downstream 100 bases:

>100_bases
AATAGATTGTGTTTGAAATAGATTATGTTTGAAATAGATTATGTTTGAAATAGATTATGTTTGAAATAGATTATGTTTGA
TAACACATGTATTAGATAAA

Product: hypothetical protein

Products: NA

Alternate protein names: ImpE Family Protein; Cytoplasmic Protein; Type VI Secretion System Protein ImpE; ImpE-Like Protein; ImpE Protein Superfamily Protein; Secretion Protein; Virulence Protein SciE Type Family Protein; ImpE Protein; Cytoplasmic Protein SciE; Protein Of Avirulence Locus ImpE; ImpE Family T6SS E

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MNTTNLTELLKSASLTEMLADVIATIKAKPTDTDTRELLFKLYCIDGSWQKALLQLETLTQLLPEFTKQAELYKNLILSE
KMRDEVLAGKRSPGTLGNDLPEWVALLQQANQLHHDGDHQQSEALREQALQQAPESIGESAATGCFAWIADSDGRMGPVC
EFISAGGYRWIPFAEIQSLTVSKPKNITDLIWAPAQVKVKDKVWYGYIPARYPLTPETDNETKLGLKTEWHQPTDSLYIG
AGRKMFITDQGEHALFDIEEIVFEIDCI

Sequences:

>Translated_268_residues
MNTTNLTELLKSASLTEMLADVIATIKAKPTDTDTRELLFKLYCIDGSWQKALLQLETLTQLLPEFTKQAELYKNLILSE
KMRDEVLAGKRSPGTLGNDLPEWVALLQQANQLHHDGDHQQSEALREQALQQAPESIGESAATGCFAWIADSDGRMGPVC
EFISAGGYRWIPFAEIQSLTVSKPKNITDLIWAPAQVKVKDKVWYGYIPARYPLTPETDNETKLGLKTEWHQPTDSLYIG
AGRKMFITDQGEHALFDIEEIVFEIDCI
>Mature_268_residues
MNTTNLTELLKSASLTEMLADVIATIKAKPTDTDTRELLFKLYCIDGSWQKALLQLETLTQLLPEFTKQAELYKNLILSE
KMRDEVLAGKRSPGTLGNDLPEWVALLQQANQLHHDGDHQQSEALREQALQQAPESIGESAATGCFAWIADSDGRMGPVC
EFISAGGYRWIPFAEIQSLTVSKPKNITDLIWAPAQVKVKDKVWYGYIPARYPLTPETDNETKLGLKTEWHQPTDSLYIG
AGRKMFITDQGEHALFDIEEIVFEIDCI

Specific function: Unknown

COG id: COG4455

COG function: function code R; Protein of avirulence locus involved in temperature-dependent protein secretion

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30086; Mature: 30086

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTTNLTELLKSASLTEMLADVIATIKAKPTDTDTRELLFKLYCIDGSWQKALLQLETLT
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
QLLPEFTKQAELYKNLILSEKMRDEVLAGKRSPGTLGNDLPEWVALLQQANQLHHDGDHQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHH
QSEALREQALQQAPESIGESAATGCFAWIADSDGRMGPVCEFISAGGYRWIPFAEIQSLT
HHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHCCCEEECCHHHHHHHH
VSKPKNITDLIWAPAQVKVKDKVWYGYIPARYPLTPETDNETKLGLKTEWHQPTDSLYIG
CCCCCCCHHHEECCCEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
AGRKMFITDQGEHALFDIEEIVFEIDCI
CCCEEEEECCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNTTNLTELLKSASLTEMLADVIATIKAKPTDTDTRELLFKLYCIDGSWQKALLQLETLT
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
QLLPEFTKQAELYKNLILSEKMRDEVLAGKRSPGTLGNDLPEWVALLQQANQLHHDGDHQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHH
QSEALREQALQQAPESIGESAATGCFAWIADSDGRMGPVCEFISAGGYRWIPFAEIQSLT
HHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHCCCEEECCHHHHHHHH
VSKPKNITDLIWAPAQVKVKDKVWYGYIPARYPLTPETDNETKLGLKTEWHQPTDSLYIG
CCCCCCCHHHEECCCEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
AGRKMFITDQGEHALFDIEEIVFEIDCI
CCCEEEEECCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA