Click here to switch to the map view.

The map label for this gene is ccmD [H]

Identifier: 108812371

GI number: 108812371

Start: 2496709

End: 2497011

Strand: Reverse

Name: ccmD [H]

Synonym: YPN_2210

Alternate gene names: 108812371

Gene position: 2497011-2496709 (Counterclockwise)

Preceding gene: 108812372

Following gene: 108812370

Centisome position: 55.07

GC content: 51.82

Gene sequence:

>303_bases
ATGACCCCCGCTTTTCACTCATGGGCAGAATTTTTTGCCATGGGCAACTATGCCTTTTATGTCTGGCTCGCTGTGGCAGC
CACCTTGTTATCATTGCTGGGCTTGCTAATGCACACGCTGTGGCAGCACAAACAGCTACTGGCCGATATTCACCGCCGTC
AGGCTCGGGAACAACGTATTCGTCAGGCGCAGCTTAACCAGACATCGATGCATCAAGTACCGTTGCATCAAGCACCATTA
CATCAAGCACCGTTACAACAAGCACCCCAGCACATCGCCAATTTACAGGAGAAGCGACCGTGA

Upstream 100 bases:

>100_bases
GCTTTATCACACTGACATTAATGCGCTTGCGTAATTTGATTTTGCAGCAAGAGCGCCACCGTCCTTGGGTTACTGCCTTA
TTACGCAAGGAGCCGCGCGT

Downstream 100 bases:

>100_bases
ACCCACGTAGAAAAAGTCGGCTCTATCTGGCGATGGTGGTTCTGATCGGCATCTCTTTGACCACCACGTTGGTGCTGTAT
GCGCTGCGTTCAAATATCGA

Product: heme exporter protein D

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CcmD [H]

Number of amino acids: Translated: 100; Mature: 99

Protein sequence:

>100_residues
MTPAFHSWAEFFAMGNYAFYVWLAVAATLLSLLGLLMHTLWQHKQLLADIHRRQAREQRIRQAQLNQTSMHQVPLHQAPL
HQAPLQQAPQHIANLQEKRP

Sequences:

>Translated_100_residues
MTPAFHSWAEFFAMGNYAFYVWLAVAATLLSLLGLLMHTLWQHKQLLADIHRRQAREQRIRQAQLNQTSMHQVPLHQAPL
HQAPLQQAPQHIANLQEKRP
>Mature_99_residues
TPAFHSWAEFFAMGNYAFYVWLAVAATLLSLLGLLMHTLWQHKQLLADIHRRQAREQRIRQAQLNQTSMHQVPLHQAPLH
QAPLQQAPQHIANLQEKRP

Specific function: Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes [H]

COG id: COG3114

COG function: function code U; Heme exporter protein D

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmD/CycX/HelD family [H]

Homologues:

Organism=Escherichia coli, GI1788526, Length=50, Percent_Identity=56, Blast_Score=66, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007078 [H]

Pfam domain/function: PF04995 CcmD [H]

EC number: NA

Molecular weight: Translated: 11638; Mature: 11506

Theoretical pI: Translated: 10.91; Mature: 10.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPAFHSWAEFFAMGNYAFYVWLAVAATLLSLLGLLMHTLWQHKQLLADIHRRQAREQRI
CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQAQLNQTSMHQVPLHQAPLHQAPLQQAPQHIANLQEKRP
HHHHHCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TPAFHSWAEFFAMGNYAFYVWLAVAATLLSLLGLLMHTLWQHKQLLADIHRRQAREQRI
CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQAQLNQTSMHQVPLHQAPLHQAPLQQAPQHIANLQEKRP
HHHHHCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]