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The map label for this gene is ccmH [H]

Identifier: 108812367

GI number: 108812367

Start: 2493180

End: 2493857

Strand: Reverse

Name: ccmH [H]

Synonym: YPN_2206

Alternate gene names: 108812367

Gene position: 2493857-2493180 (Counterclockwise)

Preceding gene: 108812368

Following gene: 108812366

Centisome position: 55.0

GC content: 47.79

Gene sequence:

>678_bases
ATGATGGTGATGGAATGTTGGGCCTGGATTTGGGGGTATACGGCGCACCAGAAACGTTCCTTATCGATGGTCAAGGGGTT
ATCCGTTACCGCCATGCTGGTGATCTTAATGATCGGGTCTGGCAGCAGGAAATCTTACCGCTGTATAAAAAGTACCAGGG
GGCGCATGAGGTTACTCAGTCTGCTACTGGGTCTGATATTGAGCTGGGGAGTATTGGCGACCATCGATACTTATCGCTTC
AGTTCGGTAGAACAAGAGCAGCAATACCGTGCACTGACCGAGCAACTGCGTTGCCCAAAATGCCAGAACAACAGTATTGC
TGACTCGAATGCCACCATTGCGGCCGATATGCGCGCTAAAGTGTATGAACTGATGCAACAAGGTTATTCCAAACAGCAGA
TTGTTGATTATATGGTGGCCCGCTACGGTAACTTTGTGACCTATGAACCACCAGTAACGGCTGCGACGATAATTCTATGG
GCAGGGCCGCTACTGTTTGTGTTAATTGGGGCGGCGATAGTGGTGTTACGCGCCCGGCGGCGAGTCGAGAAAGAGCCGCC
ACTTTCACAACAAGAACAGCAACGGTTACAAAGCTTATTGGCTGAAAATAGCGTATTACAAAATAACGCATTACAAAATA
ATAAGTTACAAGAAGAATCTGACAGGAAAAAACCATAA

Upstream 100 bases:

>100_bases
GCTCAAGGTATCCGTGTGGTGGGCCTGAATTATAAAGATGACCGTAGCAAAGCCGTGCAGTGGCTGAATTCGCTGGGTAA
CCCTTATTTTCTCAGTTTGT

Downstream 100 bases:

>100_bases
TGGCTTTTTGGCTGATAGTCATCATTTCGTTGGCGGTTGCAGGGGCCTTATTGGTCATTCCGGTCATCCGAAAAAATGAA
AATAAGCGGGTTACCACCAG

Product: cytochrome c-type biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MMVMECWAWIWGYTAHQKRSLSMVKGLSVTAMLVILMIGSGSRKSYRCIKSTRGRMRLLSLLLGLILSWGVLATIDTYRF
SSVEQEQQYRALTEQLRCPKCQNNSIADSNATIAADMRAKVYELMQQGYSKQQIVDYMVARYGNFVTYEPPVTAATIILW
AGPLLFVLIGAAIVVLRARRRVEKEPPLSQQEQQRLQSLLAENSVLQNNALQNNKLQEESDRKKP

Sequences:

>Translated_225_residues
MMVMECWAWIWGYTAHQKRSLSMVKGLSVTAMLVILMIGSGSRKSYRCIKSTRGRMRLLSLLLGLILSWGVLATIDTYRF
SSVEQEQQYRALTEQLRCPKCQNNSIADSNATIAADMRAKVYELMQQGYSKQQIVDYMVARYGNFVTYEPPVTAATIILW
AGPLLFVLIGAAIVVLRARRRVEKEPPLSQQEQQRLQSLLAENSVLQNNALQNNKLQEESDRKKP
>Mature_225_residues
MMVMECWAWIWGYTAHQKRSLSMVKGLSVTAMLVILMIGSGSRKSYRCIKSTRGRMRLLSLLLGLILSWGVLATIDTYRF
SSVEQEQQYRALTEQLRCPKCQNNSIADSNATIAADMRAKVYELMQQGYSKQQIVDYMVARYGNFVTYEPPVTAATIILW
AGPLLFVLIGAAIVVLRARRRVEKEPPLSQQEQQRLQSLLAENSVLQNNALQNNKLQEESDRKKP

Specific function: May be required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=119, Percent_Identity=61.3445378151261, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1790512, Length=82, Percent_Identity=42.6829268292683, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 25593; Mature: 25593

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMVMECWAWIWGYTAHQKRSLSMVKGLSVTAMLVILMIGSGSRKSYRCIKSTRGRMRLLS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
LLLGLILSWGVLATIDTYRFSSVEQEQQYRALTEQLRCPKCQNNSIADSNATIAADMRAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
VYELMQQGYSKQQIVDYMVARYGNFVTYEPPVTAATIILWAGPLLFVLIGAAIVVLRARR
HHHHHHCCCCHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RVEKEPPLSQQEQQRLQSLLAENSVLQNNALQNNKLQEESDRKKP
HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCC
>Mature Secondary Structure
MMVMECWAWIWGYTAHQKRSLSMVKGLSVTAMLVILMIGSGSRKSYRCIKSTRGRMRLLS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
LLLGLILSWGVLATIDTYRFSSVEQEQQYRALTEQLRCPKCQNNSIADSNATIAADMRAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
VYELMQQGYSKQQIVDYMVARYGNFVTYEPPVTAATIILWAGPLLFVLIGAAIVVLRARR
HHHHHHCCCCHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RVEKEPPLSQQEQQRLQSLLAENSVLQNNALQNNKLQEESDRKKP
HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 7635817 [H]