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The map label for this gene is ccmH [H]

Identifier: 108812366

GI number: 108812366

Start: 2491954

End: 2493180

Strand: Reverse

Name: ccmH [H]

Synonym: YPN_2205

Alternate gene names: 108812366

Gene position: 2493180-2491954 (Counterclockwise)

Preceding gene: 108812367

Following gene: 108812365

Centisome position: 54.98

GC content: 49.55

Gene sequence:

>1227_bases
ATGGCTTTTTGGCTGATAGTCATCATTTCGTTGGCGGTTGCAGGGGCCTTATTGGTCATTCCGGTCATCCGAAAAAATGA
AAATAAGCGGGTTACCACCAGGGATGAGCTGAATAAGGCTATTTATCGTGATCGGTTATCTGAATTGGCCGAAGATGAAG
CGCAGGGCGTGATCGCAGAACGGCCTGAACTGGTTAAAGAGCTGCAACAAAACTTGCTGACAGATATCCCGCAGCAGTTG
GGAGAAGTAAAAAACCCGATCAATCGCTGGGTATTATTGCCCGGAGTCGTGGTATTGGTGGTGGTAGCGGTCGGGTTGTA
CCTAAAAACCGGCGGTTTAGAGCAGGTCGCGGCATGGCATCAGGTTGCTGCGCAAATGCCTGAATTACGCGCTCGGGTTG
CCAACGAACATGCCGATCCATTAAGTATGGAGGATGTGGCCCGCTTGGGGCTCGGTTTACGTACCTCTCTGCAACAGGAT
GCTGGTAACGTCAATGATTGGATGATGTTGGGCCGAGTAGGGATGGCGCTCAATAATGCCACCACCGCAACACAGGCTTT
TGCGCACGCTTATCAACTCGCGCCCGATAATAATGAGGTTAAACTCGGGTATGTCGAAGTACTCACCCGATCCAATGATC
CAGAAGATAACCAATTGGCGACACAGATGTTGCGTGCAATGGTGGGGCAAGACCATACGAATTTACGTGCGATGAGTTTA
TTGGCTTTTAATGCTTTTGAGCAGGGTGATTTCAAACAAGCGATAGCCGTGTGGGAAGTTATGCTAAAATTGTTGCCGGC
TAGCGATTCACGTGTAGACGTGGTAAAACGCAGTATTCAGCAAGCCAAATCACAGATAGAGCAAGAAACAGCTACACTGG
GAATTGAGGTTTCGCTATCCTCTGATGCGGCGCAAGCATTACCCCAACAAGGGGCACTGATTATCTCTGTGACCAATGGC
ATAAATCCGGTACCGGTTGCTGTAAAGCAACTGCCATTGAGCAGATTCCCGCTAGCGGTTACGCTGGATGACAGCAATGC
AATGATGCCAGAACGTTTGCTCTCTTCTTTACAGCAGGTGAAAGTACGTGTACGCCTCTCTTTGGATGGGGCCGCGAATG
CGCAGTCTGGCGACTGGTACGGTGAGAGCGCGGTGCAGGATTTCAAAGGCAATGGGCCGTCGAGTGAGCAAAAAATAGGC
GTTCAAATAAATAAACAAATCCCTTAA

Upstream 100 bases:

>100_bases
AGCAACGGTTACAAAGCTTATTGGCTGAAAATAGCGTATTACAAAATAACGCATTACAAAATAATAAGTTACAAGAAGAA
TCTGACAGGAAAAAACCATA

Downstream 100 bases:

>100_bases
GTGAAAGGGATAGACAGACTTTCATGGAGAAAAATATGAACTTCCGCCTTACTGGGTTGGCTTTCGCAAGCGTACTGTTA
GTTGGGTGCGCCAGTAGTTC

Product: cytochrome c-type biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 407

Protein sequence:

>408_residues
MAFWLIVIISLAVAGALLVIPVIRKNENKRVTTRDELNKAIYRDRLSELAEDEAQGVIAERPELVKELQQNLLTDIPQQL
GEVKNPINRWVLLPGVVVLVVVAVGLYLKTGGLEQVAAWHQVAAQMPELRARVANEHADPLSMEDVARLGLGLRTSLQQD
AGNVNDWMMLGRVGMALNNATTATQAFAHAYQLAPDNNEVKLGYVEVLTRSNDPEDNQLATQMLRAMVGQDHTNLRAMSL
LAFNAFEQGDFKQAIAVWEVMLKLLPASDSRVDVVKRSIQQAKSQIEQETATLGIEVSLSSDAAQALPQQGALIISVTNG
INPVPVAVKQLPLSRFPLAVTLDDSNAMMPERLLSSLQQVKVRVRLSLDGAANAQSGDWYGESAVQDFKGNGPSSEQKIG
VQINKQIP

Sequences:

>Translated_408_residues
MAFWLIVIISLAVAGALLVIPVIRKNENKRVTTRDELNKAIYRDRLSELAEDEAQGVIAERPELVKELQQNLLTDIPQQL
GEVKNPINRWVLLPGVVVLVVVAVGLYLKTGGLEQVAAWHQVAAQMPELRARVANEHADPLSMEDVARLGLGLRTSLQQD
AGNVNDWMMLGRVGMALNNATTATQAFAHAYQLAPDNNEVKLGYVEVLTRSNDPEDNQLATQMLRAMVGQDHTNLRAMSL
LAFNAFEQGDFKQAIAVWEVMLKLLPASDSRVDVVKRSIQQAKSQIEQETATLGIEVSLSSDAAQALPQQGALIISVTNG
INPVPVAVKQLPLSRFPLAVTLDDSNAMMPERLLSSLQQVKVRVRLSLDGAANAQSGDWYGESAVQDFKGNGPSSEQKIG
VQINKQIP
>Mature_407_residues
AFWLIVIISLAVAGALLVIPVIRKNENKRVTTRDELNKAIYRDRLSELAEDEAQGVIAERPELVKELQQNLLTDIPQQLG
EVKNPINRWVLLPGVVVLVVVAVGLYLKTGGLEQVAAWHQVAAQMPELRARVANEHADPLSMEDVARLGLGLRTSLQQDA
GNVNDWMMLGRVGMALNNATTATQAFAHAYQLAPDNNEVKLGYVEVLTRSNDPEDNQLATQMLRAMVGQDHTNLRAMSLL
AFNAFEQGDFKQAIAVWEVMLKLLPASDSRVDVVKRSIQQAKSQIEQETATLGIEVSLSSDAAQALPQQGALIISVTNGI
NPVPVAVKQLPLSRFPLAVTLDDSNAMMPERLLSSLQQVKVRVRLSLDGAANAQSGDWYGESAVQDFKGNGPSSEQKIGV
QINKQIP

Specific function: May be required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=196, Percent_Identity=52.5510204081633, Blast_Score=218, Evalue=4e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 44554; Mature: 44423

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFWLIVIISLAVAGALLVIPVIRKNENKRVTTRDELNKAIYRDRLSELAEDEAQGVIAE
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHC
RPELVKELQQNLLTDIPQQLGEVKNPINRWVLLPGVVVLVVVAVGLYLKTGGLEQVAAWH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
QVAAQMPELRARVANEHADPLSMEDVARLGLGLRTSLQQDAGNVNDWMMLGRVGMALNNA
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCC
TTATQAFAHAYQLAPDNNEVKLGYVEVLTRSNDPEDNQLATQMLRAMVGQDHTNLRAMSL
HHHHHHHHHHHHCCCCCCCEEEEHHHHEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHH
LAFNAFEQGDFKQAIAVWEVMLKLLPASDSRVDVVKRSIQQAKSQIEQETATLGIEVSLS
HHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEC
SDAAQALPQQGALIISVTNGINPVPVAVKQLPLSRFPLAVTLDDSNAMMPERLLSSLQQV
CHHHHHCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHH
KVRVRLSLDGAANAQSGDWYGESAVQDFKGNGPSSEQKIGVQINKQIP
EEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCCCEECEEECCCCC
>Mature Secondary Structure 
AFWLIVIISLAVAGALLVIPVIRKNENKRVTTRDELNKAIYRDRLSELAEDEAQGVIAE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHC
RPELVKELQQNLLTDIPQQLGEVKNPINRWVLLPGVVVLVVVAVGLYLKTGGLEQVAAWH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
QVAAQMPELRARVANEHADPLSMEDVARLGLGLRTSLQQDAGNVNDWMMLGRVGMALNNA
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCC
TTATQAFAHAYQLAPDNNEVKLGYVEVLTRSNDPEDNQLATQMLRAMVGQDHTNLRAMSL
HHHHHHHHHHHHCCCCCCCEEEEHHHHEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHH
LAFNAFEQGDFKQAIAVWEVMLKLLPASDSRVDVVKRSIQQAKSQIEQETATLGIEVSLS
HHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEC
SDAAQALPQQGALIISVTNGINPVPVAVKQLPLSRFPLAVTLDDSNAMMPERLLSSLQQV
CHHHHHCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHH
KVRVRLSLDGAANAQSGDWYGESAVQDFKGNGPSSEQKIGVQINKQIP
EEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCCCEECEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503; 7635817 [H]