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The map label for this gene is yeaM [H]

Identifier: 108812346

GI number: 108812346

Start: 2468355

End: 2469140

Strand: Reverse

Name: yeaM [H]

Synonym: YPN_2184

Alternate gene names: 108812346

Gene position: 2469140-2468355 (Counterclockwise)

Preceding gene: 108812349

Following gene: 108812345

Centisome position: 54.45

GC content: 48.98

Gene sequence:

>786_bases
ATGACAGGACCTGATTTTCCTGTAGTCACCTCAAGGATCCCACAGACCTTGTCCTTTCGCTGTGAAGCGTTTAATGCCAA
TACCGAATTTTTGCCTCACACACATCCTTTTGGGCAATTGATATGCGTTAAATCCGGTGTTCTGGCCATGAGCATTGGTG
GTCAGCGTTTCCTTGCACCACCTGAGTTTATTGTCTGGATCCCCGCGGGCATGGAGCACTCTAGCTATAATCGTAAACCC
ATGCATTTTCGTGCCATTGATATTGCGCTGGATTTTTGTACCGAACTCCCGGCGTCACCTGGACTGATGAATGTCAGCCC
CATCTTTAATGCCATTGTGGAGGATTGTTTTACACGTGATTTATTGATGCCAGAAACTCAGCAGGATAGACGTCTGGCCC
ATGTATTGATTGATCAACTCAAGGTGTCACCGGTGCAGCGGACTTATCTGCCAACTTCACAAGATAAACTGTTGTCGCCT
ATTTTAGCCGCATTGGAGCGCTGCCCTGCGGATAGCACCTCGCTGGCACTTTGGGCCAAGCGGGTATATACCACCGAACG
TACTTTATCCCGCCGTTGCCAGCAGGAGCTTGGTATGGCATTTAGCGAATGGCGGCAGCGCTTACGTTTTTTACATGCCA
TCTCATTGTTAGAACAGGGGAAAACGGTAAACAGTGTGGCATTAGATGTCGGTTATAGCTCCGCCTCTGCTTTTATCGCC
ATGTTTCAGCAAATATCGGGTACCACGCCTGAGCGTTTCCGGCGGGGCAATAGTGGCTTATACTAA

Upstream 100 bases:

>100_bases
ACCGAAATTAAGACAGTCATCAGCGAAATTAAGACAGTCATCACCGAAATTAAGGCAATAACCATGAAGAGCATTATTTT
GCTGCGGGGGATAATGGACG

Downstream 100 bases:

>100_bases
GCCCCCTGTTTTTCATCTGTATGGCAGTTCGCTGTCGGAGAGTAAAGTGAAAATTCTGGTTGATGAAAATATGCCGTACG
CTGAGGAGCTGTTCCGGCGT

Product: AraC family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MTGPDFPVVTSRIPQTLSFRCEAFNANTEFLPHTHPFGQLICVKSGVLAMSIGGQRFLAPPEFIVWIPAGMEHSSYNRKP
MHFRAIDIALDFCTELPASPGLMNVSPIFNAIVEDCFTRDLLMPETQQDRRLAHVLIDQLKVSPVQRTYLPTSQDKLLSP
ILAALERCPADSTSLALWAKRVYTTERTLSRRCQQELGMAFSEWRQRLRFLHAISLLEQGKTVNSVALDVGYSSASAFIA
MFQQISGTTPERFRRGNSGLY

Sequences:

>Translated_261_residues
MTGPDFPVVTSRIPQTLSFRCEAFNANTEFLPHTHPFGQLICVKSGVLAMSIGGQRFLAPPEFIVWIPAGMEHSSYNRKP
MHFRAIDIALDFCTELPASPGLMNVSPIFNAIVEDCFTRDLLMPETQQDRRLAHVLIDQLKVSPVQRTYLPTSQDKLLSP
ILAALERCPADSTSLALWAKRVYTTERTLSRRCQQELGMAFSEWRQRLRFLHAISLLEQGKTVNSVALDVGYSSASAFIA
MFQQISGTTPERFRRGNSGLY
>Mature_260_residues
TGPDFPVVTSRIPQTLSFRCEAFNANTEFLPHTHPFGQLICVKSGVLAMSIGGQRFLAPPEFIVWIPAGMEHSSYNRKPM
HFRAIDIALDFCTELPASPGLMNVSPIFNAIVEDCFTRDLLMPETQQDRRLAHVLIDQLKVSPVQRTYLPTSQDKLLSPI
LAALERCPADSTSLALWAKRVYTTERTLSRRCQQELGMAFSEWRQRLRFLHAISLLEQGKTVNSVALDVGYSSASAFIAM
FQQISGTTPERFRRGNSGLY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=221, Percent_Identity=31.2217194570136, Blast_Score=111, Evalue=6e-26,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 29311; Mature: 29180

Theoretical pI: Translated: 8.38; Mature: 8.38

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGPDFPVVTSRIPQTLSFRCEAFNANTEFLPHTHPFGQLICVKSGVLAMSIGGQRFLAP
CCCCCCCHHHHHCCHHHHHEEEEECCCCCCCCCCCCCHHEEEECCCEEEEEECCCCCCCC
PEFIVWIPAGMEHSSYNRKPMHFRAIDIALDFCTELPASPGLMNVSPIFNAIVEDCFTRD
CCEEEEECCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHC
LLMPETQQDRRLAHVLIDQLKVSPVQRTYLPTSQDKLLSPILAALERCPADSTSLALWAK
CCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH
RVYTTERTLSRRCQQELGMAFSEWRQRLRFLHAISLLEQGKTVNSVALDVGYSSASAFIA
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHEEEECCCCHHHHHHH
MFQQISGTTPERFRRGNSGLY
HHHHHCCCCHHHHHCCCCCCC
>Mature Secondary Structure 
TGPDFPVVTSRIPQTLSFRCEAFNANTEFLPHTHPFGQLICVKSGVLAMSIGGQRFLAP
CCCCCCHHHHHCCHHHHHEEEEECCCCCCCCCCCCCHHEEEECCCEEEEEECCCCCCCC
PEFIVWIPAGMEHSSYNRKPMHFRAIDIALDFCTELPASPGLMNVSPIFNAIVEDCFTRD
CCEEEEECCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHC
LLMPETQQDRRLAHVLIDQLKVSPVQRTYLPTSQDKLLSPILAALERCPADSTSLALWAK
CCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH
RVYTTERTLSRRCQQELGMAFSEWRQRLRFLHAISLLEQGKTVNSVALDVGYSSASAFIA
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHEEEECCCCHHHHHHH
MFQQISGTTPERFRRGNSGLY
HHHHHCCCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]