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The map label for this gene is dedA [H]

Identifier: 108812342

GI number: 108812342

Start: 2464301

End: 2464963

Strand: Reverse

Name: dedA [H]

Synonym: YPN_2180

Alternate gene names: 108812342

Gene position: 2464963-2464301 (Counterclockwise)

Preceding gene: 108812343

Following gene: 108812341

Centisome position: 54.36

GC content: 46.0

Gene sequence:

>663_bases
ATGGAATTTATACGTTTCGTCATAGATTTTATTTTGAATATTGATGTTCATCTGGCTGAACTGGTTGCGCAATATGGGAT
ATGGGTTTACGCCATTCTATTCCTGATTTTATTCTGTGAAACCGGTCTGGTGGTGACACCGTTCCTGCCAGGGGACTCTC
TGTTGTTTGTTGCAGGTGCCTTGGCCTCGTTGCCTTCCAATGATCTTAATGTCCACACGATGGTGACCCTAATGGTGATT
GCCGCCATTCTGGGGGATGCGATTAACTACACGATTGGCCGTATCTTCGGTGAAAAGTTATTCAGCAATCCAGATTCTAA
AATCTTCCGCCGCAGTTATCTGGATAAGACGCATCAGTTCTACGAGAAGCATGGCGGTAAAGCGATTATTCTGGCGCGGT
TTGTCCCGATCATTCGCACGTTTGCCCCATTCGTGGCCGGTATGGGGAAAATGTCTTATCGCCACTTTGCTGCCTATAAC
GTGATTGGGGCGTTGGTATGGGTGCTGTTATTCACTTATGCTGGCTACCTGTTTGGTAACGTACCTATCGTGCAGAATAA
TCTGAAGTTATTGATTGTGATCATTATCGTGGTGTCAATTTTGCCAGGCGTATTTGAAGTTTGGCGGCATCGGCGTGCGG
CGGTACGTCAAAAAAATCAGTAA

Upstream 100 bases:

>100_bases
ACTGAGGCGTCGCTTTGGGCTAAGGAATACCTAAGGAAATTCAGCTAATCTCACTTGCCTAACGAACGATTGGGTGTGTT
TATTCATTTCGAGAGTATTT

Downstream 100 bases:

>100_bases
AAACGTTACATAAGCTGTGGGTTCACCAGTTTTTTATCTACACTGTCGAATCAATATGGTTTAATGAGTAACATTTGTGG
TCTGTTCCTGCAGACAATCC

Product: hypothetical protein

Products: NA

Alternate protein names: Protein DSG-1 [H]

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MEFIRFVIDFILNIDVHLAELVAQYGIWVYAILFLILFCETGLVVTPFLPGDSLLFVAGALASLPSNDLNVHTMVTLMVI
AAILGDAINYTIGRIFGEKLFSNPDSKIFRRSYLDKTHQFYEKHGGKAIILARFVPIIRTFAPFVAGMGKMSYRHFAAYN
VIGALVWVLLFTYAGYLFGNVPIVQNNLKLLIVIIIVVSILPGVFEVWRHRRAAVRQKNQ

Sequences:

>Translated_220_residues
MEFIRFVIDFILNIDVHLAELVAQYGIWVYAILFLILFCETGLVVTPFLPGDSLLFVAGALASLPSNDLNVHTMVTLMVI
AAILGDAINYTIGRIFGEKLFSNPDSKIFRRSYLDKTHQFYEKHGGKAIILARFVPIIRTFAPFVAGMGKMSYRHFAAYN
VIGALVWVLLFTYAGYLFGNVPIVQNNLKLLIVIIIVVSILPGVFEVWRHRRAAVRQKNQ
>Mature_220_residues
MEFIRFVIDFILNIDVHLAELVAQYGIWVYAILFLILFCETGLVVTPFLPGDSLLFVAGALASLPSNDLNVHTMVTLMVI
AAILGDAINYTIGRIFGEKLFSNPDSKIFRRSYLDKTHQFYEKHGGKAIILARFVPIIRTFAPFVAGMGKMSYRHFAAYN
VIGALVWVLLFTYAGYLFGNVPIVQNNLKLLIVIIIVVSILPGVFEVWRHRRAAVRQKNQ

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=210, Percent_Identity=86.1904761904762, Blast_Score=373, Evalue=1e-105,
Organism=Escherichia coli, GI1789481, Length=155, Percent_Identity=33.5483870967742, Blast_Score=98, Evalue=3e-22,
Organism=Escherichia coli, GI1789384, Length=192, Percent_Identity=28.6458333333333, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786252, Length=209, Percent_Identity=26.7942583732057, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24809; Mature: 24809

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFIRFVIDFILNIDVHLAELVAQYGIWVYAILFLILFCETGLVVTPFLPGDSLLFVAGA
CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHH
LASLPSNDLNVHTMVTLMVIAAILGDAINYTIGRIFGEKLFSNPDSKIFRRSYLDKTHQF
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
YEKHGGKAIILARFVPIIRTFAPFVAGMGKMSYRHFAAYNVIGALVWVLLFTYAGYLFGN
HHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VPIVQNNLKLLIVIIIVVSILPGVFEVWRHRRAAVRQKNQ
CCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEFIRFVIDFILNIDVHLAELVAQYGIWVYAILFLILFCETGLVVTPFLPGDSLLFVAGA
CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHH
LASLPSNDLNVHTMVTLMVIAAILGDAINYTIGRIFGEKLFSNPDSKIFRRSYLDKTHQF
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
YEKHGGKAIILARFVPIIRTFAPFVAGMGKMSYRHFAAYNVIGALVWVLLFTYAGYLFGN
HHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VPIVQNNLKLLIVIIIVVSILPGVFEVWRHRRAAVRQKNQ
CCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]