Definition | Yersinia pestis Nepal516, complete genome. |
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Accession | NC_008149 |
Length | 4,534,590 |
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The map label for this gene is 108811241
Identifier: 108811241
GI number: 108811241
Start: 1240024
End: 1240878
Strand: Reverse
Name: 108811241
Synonym: YPN_1077
Alternate gene names: NA
Gene position: 1240878-1240024 (Counterclockwise)
Preceding gene: 108811243
Following gene: 108811240
Centisome position: 27.36
GC content: 38.01
Gene sequence:
>855_bases ATGGGCGTTTTGTACTTTTTGTCGATCATTGCTACCCCGTTGTTTTTTATGATCATTGGCTATATCGACTCAAATGACAA AATCGATCAGAAAGACATTTTCAGAAAATTAAAATCGATTATAACCATTATTATTTTCTGGAACGTTCTCTTCTACTTTA TCAATGAAGATGGTTTCAAACGGGGTTATTTCCTGCAAAGCTGGCTTCTGTTTAGTATCGCCATCATTTACCTCATAAAC CCGATTATCTCCAAGATATTAAAAAGTAACAGGACAGCTATCATCACGCTCTCTTGCCTGGTCATTTTCTCCGTGACTAT TGATCTGATCAGTGCCTTCAGTGAGCGACCATACCTTATTGATTTTCCACAATACTTTAGGCTATGGACTTGGATTTTTT ACTACATGACGGGCCGATTCCTCTGCTCGCGAATTTGTCAGAAGATGACAAAATTGCCAAAGGTTCGTCTTGCTGCCAAG TTACTGCTGCTCCCTACATCCATCTCGATGTATTATTACGAAAGTTTCATGTCAATTTACGTGTATAAAACCGTGAACGC GAGTTACTTCCTTGATAACTTCCACGTTTTAGTCCTCAGCTTATGTCTGTTTGTTATATTTGATAACTTTGACACTCAAT ATGAATGGATAAAGAAAACATTGGCGTATATCAGCCCATCAATGATTGGCGTTTATATATTGCATGATGGAATTTTCTAC TTTATTGCCAGCGCATATAACTTATCAGATGTAACGTTAAGATTTACGCTGCTGTTATCCGTATTTGCCGCCTCAGTTTT ATTGTCACGGGCCCTATTACTGAATAAATACACCTCGCGCTTTATCTCATTCTGA
Upstream 100 bases:
>100_bases CGGTTTACATGCCCTAAAAACGTTGAGCTGCTTTTCCGCTGTTACGTTCTACTCCGCCAGTAAAACCTGTACTGAACAGT GCTTTTTAAGTGGGGAAGTC
Downstream 100 bases:
>100_bases TCGAAAAAGACCTGATTGTGATTATCTGGGAACGTGCAGATCTGATGGAAGGTTATCACTATCCACGTTAGTTGTTGTGG CTCGGGGTGATCACCAGCGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 284; Mature: 283
Protein sequence:
>284_residues MGVLYFLSIIATPLFFMIIGYIDSNDKIDQKDIFRKLKSIITIIIFWNVLFYFINEDGFKRGYFLQSWLLFSIAIIYLIN PIISKILKSNRTAIITLSCLVIFSVTIDLISAFSERPYLIDFPQYFRLWTWIFYYMTGRFLCSRICQKMTKLPKVRLAAK LLLLPTSISMYYYESFMSIYVYKTVNASYFLDNFHVLVLSLCLFVIFDNFDTQYEWIKKTLAYISPSMIGVYILHDGIFY FIASAYNLSDVTLRFTLLLSVFAASVLLSRALLLNKYTSRFISF
Sequences:
>Translated_284_residues MGVLYFLSIIATPLFFMIIGYIDSNDKIDQKDIFRKLKSIITIIIFWNVLFYFINEDGFKRGYFLQSWLLFSIAIIYLIN PIISKILKSNRTAIITLSCLVIFSVTIDLISAFSERPYLIDFPQYFRLWTWIFYYMTGRFLCSRICQKMTKLPKVRLAAK LLLLPTSISMYYYESFMSIYVYKTVNASYFLDNFHVLVLSLCLFVIFDNFDTQYEWIKKTLAYISPSMIGVYILHDGIFY FIASAYNLSDVTLRFTLLLSVFAASVLLSRALLLNKYTSRFISF >Mature_283_residues GVLYFLSIIATPLFFMIIGYIDSNDKIDQKDIFRKLKSIITIIIFWNVLFYFINEDGFKRGYFLQSWLLFSIAIIYLINP IISKILKSNRTAIITLSCLVIFSVTIDLISAFSERPYLIDFPQYFRLWTWIFYYMTGRFLCSRICQKMTKLPKVRLAAKL LLLPTSISMYYYESFMSIYVYKTVNASYFLDNFHVLVLSLCLFVIFDNFDTQYEWIKKTLAYISPSMIGVYILHDGIFYF IASAYNLSDVTLRFTLLLSVFAASVLLSRALLLNKYTSRFISF
Specific function: Unknown
COG id: COG3274
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33394; Mature: 33263
Theoretical pI: Translated: 9.55; Mature: 9.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVLYFLSIIATPLFFMIIGYIDSNDKIDQKDIFRKLKSIITIIIFWNVLFYFINEDGFK CHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC RGYFLQSWLLFSIAIIYLINPIISKILKSNRTAIITLSCLVIFSVTIDLISAFSERPYLI CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCCCEEE DFPQYFRLWTWIFYYMTGRFLCSRICQKMTKLPKVRLAAKLLLLPTSISMYYYESFMSIY ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHH VYKTVNASYFLDNFHVLVLSLCLFVIFDNFDTQYEWIKKTLAYISPSMIGVYILHDGIFY HEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH FIASAYNLSDVTLRFTLLLSVFAASVLLSRALLLNKYTSRFISF HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure GVLYFLSIIATPLFFMIIGYIDSNDKIDQKDIFRKLKSIITIIIFWNVLFYFINEDGFK HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC RGYFLQSWLLFSIAIIYLINPIISKILKSNRTAIITLSCLVIFSVTIDLISAFSERPYLI CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCCCEEE DFPQYFRLWTWIFYYMTGRFLCSRICQKMTKLPKVRLAAKLLLLPTSISMYYYESFMSIY ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHH VYKTVNASYFLDNFHVLVLSLCLFVIFDNFDTQYEWIKKTLAYISPSMIGVYILHDGIFY HEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH FIASAYNLSDVTLRFTLLLSVFAASVLLSRALLLNKYTSRFISF HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA