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The map label for this gene is xseB [H]

Identifier: 108811078

GI number: 108811078

Start: 1064913

End: 1065206

Strand: Reverse

Name: xseB [H]

Synonym: YPN_0913

Alternate gene names: 108811078

Gene position: 1065206-1064913 (Counterclockwise)

Preceding gene: 108811081

Following gene: 108811077

Centisome position: 23.49

GC content: 47.62

Gene sequence:

>294_bases
ATGTTACGTTCCATAGAAAACATTGAGTCGACGAAAACTATGCCGAAAAAAGCCGCTTCACCAGAAATCAAAGCCGCCAG
CTTTGAAACATCACTCAGTGAGCTGGAACAAATTGTTACTCGCCTGGAATCCGGTGAGTTACCGCTGGAAGATGCGCTAA
ATGAATTTGAACGGGGTGTACAACTGGCCCGTCAAGGGCAACAAACCCTGTTGCAAGCCGAACAACGGGTACAAATTCTC
CTGAGTGACGATGTTGACGCCCCGTTGAAACCTTTTACCCCAGATACTGAGTAG

Upstream 100 bases:

>100_bases
GTTCTGGCGGGTTATGCCCAGAAAATCCCTCATTAGCTGGAATGCTATGACGTGACATTAATTTATGACGCTACATTAAT
TCATAACGTTACGTTAATTG

Downstream 100 bases:

>100_bases
CCTTATGTCGGATACCCATGCACCTGTTGATTTTAAACAACAACTTGCCGCTCATCAGCAGCGAGTCAATCAGGCTCTGC
TGGATTTCATTGCTCCCCTG

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit [H]

Number of amino acids: Translated: 97; Mature: 97

Protein sequence:

>97_residues
MLRSIENIESTKTMPKKAASPEIKAASFETSLSELEQIVTRLESGELPLEDALNEFERGVQLARQGQQTLLQAEQRVQIL
LSDDVDAPLKPFTPDTE

Sequences:

>Translated_97_residues
MLRSIENIESTKTMPKKAASPEIKAASFETSLSELEQIVTRLESGELPLEDALNEFERGVQLARQGQQTLLQAEQRVQIL
LSDDVDAPLKPFTPDTE
>Mature_97_residues
MLRSIENIESTKTMPKKAASPEIKAASFETSLSELEQIVTRLESGELPLEDALNEFERGVQLARQGQQTLLQAEQRVQIL
LSDDVDAPLKPFTPDTE

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family [H]

Homologues:

Organism=Escherichia coli, GI1786624, Length=84, Percent_Identity=77.3809523809524, Blast_Score=122, Evalue=4e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003761
- ProDom:   PD028235 [H]

Pfam domain/function: PF02609 Exonuc_VII_S [H]

EC number: =3.1.11.6 [H]

Molecular weight: Translated: 10811; Mature: 10811

Theoretical pI: Translated: 4.16; Mature: 4.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRSIENIESTKTMPKKAASPEIKAASFETSLSELEQIVTRLESGELPLEDALNEFERGV
CCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
QLARQGQQTLLQAEQRVQILLSDDVDAPLKPFTPDTE
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLRSIENIESTKTMPKKAASPEIKAASFETSLSELEQIVTRLESGELPLEDALNEFERGV
CCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
QLARQGQQTLLQAEQRVQILLSDDVDAPLKPFTPDTE
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA