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The map label for this gene is rdgC [H]

Identifier: 108811045

GI number: 108811045

Start: 1026403

End: 1027314

Strand: Reverse

Name: rdgC [H]

Synonym: YPN_0880

Alternate gene names: 108811045

Gene position: 1027314-1026403 (Counterclockwise)

Preceding gene: 108811047

Following gene: 108811032

Centisome position: 22.66

GC content: 45.39

Gene sequence:

>912_bases
ATGCTGTGGTTTAAGAATTTAATGGTTTACCGTTTGAGCCGGGAAGTTTCGCTGTCTGCGGATGAAATGGAGAAACAGCT
AAGCGCCTTTAGTTTCACGCCTTGTGGTAGTCAGGATATGGCGAAAACCGGTTGGGTATCACCGATGGGTTCGCACAGCG
ATGCATTAACTCACACCGTTAATGGTCAGATCGTTATTTGTGCGCGCAAAGAAGAGAAAATCTTACCGTCACCGGTGATT
AAGCAAGAGTTGCAGGACAAAATCGAACGGTTGGAAGGTGAACAGCACCGCAAACTGAAGAAAACTGAAAAAGATTCATT
GAAAGATGAAGTACTGCACAGTTTGTTGCCGCGTGCATTCAGCCGTTTTAATCAAACTTTTTTGTGGATTGATACTGTCA
ATGACCTGATTATGGTCGATGCCGCAAGTGCTAAACGGGCTGAAGATACATTGGCTTTGCTGCGTAAAAGCCTGGGGTCG
TTACCTGTCGTCCCGCTAACGTTAGAAAATCCGATTGAACTGACTTTGACTGAGTGGGTTCGATCCAAAACATTGCCTGC
AGGCTTTGCCCTGATGGACGAAGCTGAACTCAAAGCAATCTTGGAAGATGGCGGTGTTATTCGCTGTAAAAAACAGGATT
TATTCAGTGATGAGATCGCCGTACATATCGAAGCAGGCAAACTGGTCACTAAATTAGCGTTGGATTGGCAAGAACGGATA
CAGTTGGTGCTGTCTGACGATGGCTCATTAAAGCGTTTAAAATTCGCTGACACGCTACGTGATCAAAACGAAGATATTGA
TCGGGAAGATTTTGCACAACGTTTCGATGCCGATTTTATTCTGATGACCAGTGAGCTGGCCGCTTTGATTAAGAATCTCA
TTGAGGCCCTTGGCGGCGAAGCACAACACTGA

Upstream 100 bases:

>100_bases
TTATTTTTTTTACTAGGGACACGCGCGCCAATTCGTTATCATGCCGCCCTGCGTTGATTAACTCGCGCGCTCCAGGCGCG
CCCGAGCCAAGGATAACACT

Downstream 100 bases:

>100_bases
TTTCAGCACACGACAGCGCGGCTAAATATAACCAAAGTCATCGGGGTTGCAGTTAGGCGGACAACATCACATCCGATCAG
CCAGCGAAAGTCGGTGACTC

Product: recombination associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MLWFKNLMVYRLSREVSLSADEMEKQLSAFSFTPCGSQDMAKTGWVSPMGSHSDALTHTVNGQIVICARKEEKILPSPVI
KQELQDKIERLEGEQHRKLKKTEKDSLKDEVLHSLLPRAFSRFNQTFLWIDTVNDLIMVDAASAKRAEDTLALLRKSLGS
LPVVPLTLENPIELTLTEWVRSKTLPAGFALMDEAELKAILEDGGVIRCKKQDLFSDEIAVHIEAGKLVTKLALDWQERI
QLVLSDDGSLKRLKFADTLRDQNEDIDREDFAQRFDADFILMTSELAALIKNLIEALGGEAQH

Sequences:

>Translated_303_residues
MLWFKNLMVYRLSREVSLSADEMEKQLSAFSFTPCGSQDMAKTGWVSPMGSHSDALTHTVNGQIVICARKEEKILPSPVI
KQELQDKIERLEGEQHRKLKKTEKDSLKDEVLHSLLPRAFSRFNQTFLWIDTVNDLIMVDAASAKRAEDTLALLRKSLGS
LPVVPLTLENPIELTLTEWVRSKTLPAGFALMDEAELKAILEDGGVIRCKKQDLFSDEIAVHIEAGKLVTKLALDWQERI
QLVLSDDGSLKRLKFADTLRDQNEDIDREDFAQRFDADFILMTSELAALIKNLIEALGGEAQH
>Mature_303_residues
MLWFKNLMVYRLSREVSLSADEMEKQLSAFSFTPCGSQDMAKTGWVSPMGSHSDALTHTVNGQIVICARKEEKILPSPVI
KQELQDKIERLEGEQHRKLKKTEKDSLKDEVLHSLLPRAFSRFNQTFLWIDTVNDLIMVDAASAKRAEDTLALLRKSLGS
LPVVPLTLENPIELTLTEWVRSKTLPAGFALMDEAELKAILEDGGVIRCKKQDLFSDEIAVHIEAGKLVTKLALDWQERI
QLVLSDDGSLKRLKFADTLRDQNEDIDREDFAQRFDADFILMTSELAALIKNLIEALGGEAQH

Specific function: May be involved in recombination [H]

COG id: COG2974

COG function: function code L; DNA recombination-dependent growth factor C

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rdgC family [H]

Homologues:

Organism=Escherichia coli, GI1786592, Length=303, Percent_Identity=83.1683168316832, Blast_Score=520, Evalue=1e-149,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007476 [H]

Pfam domain/function: PF04381 RdgC [H]

EC number: NA

Molecular weight: Translated: 34205; Mature: 34205

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLWFKNLMVYRLSREVSLSADEMEKQLSAFSFTPCGSQDMAKTGWVSPMGSHSDALTHTV
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCHHEEEC
NGQIVICARKEEKILPSPVIKQELQDKIERLEGEQHRKLKKTEKDSLKDEVLHSLLPRAF
CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRFNQTFLWIDTVNDLIMVDAASAKRAEDTLALLRKSLGSLPVVPLTLENPIELTLTEWV
HHHCCEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEHHHHHH
RSKTLPAGFALMDEAELKAILEDGGVIRCKKQDLFSDEIAVHIEAGKLVTKLALDWQERI
HHCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEECHHHHHHHHHCHHHHH
QLVLSDDGSLKRLKFADTLRDQNEDIDREDFAQRFDADFILMTSELAALIKNLIEALGGE
EEEECCCCCEEHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHCCC
AQH
CCC
>Mature Secondary Structure
MLWFKNLMVYRLSREVSLSADEMEKQLSAFSFTPCGSQDMAKTGWVSPMGSHSDALTHTV
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCHHEEEC
NGQIVICARKEEKILPSPVIKQELQDKIERLEGEQHRKLKKTEKDSLKDEVLHSLLPRAF
CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRFNQTFLWIDTVNDLIMVDAASAKRAEDTLALLRKSLGSLPVVPLTLENPIELTLTEWV
HHHCCEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEHHHHHH
RSKTLPAGFALMDEAELKAILEDGGVIRCKKQDLFSDEIAVHIEAGKLVTKLALDWQERI
HHCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEECHHHHHHHHHCHHHHH
QLVLSDDGSLKRLKFADTLRDQNEDIDREDFAQRFDADFILMTSELAALIKNLIEALGGE
EEEECCCCCEEHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHCCC
AQH
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA