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The map label for this gene is pepD [H]

Identifier: 108811030

GI number: 108811030

Start: 1008946

End: 1010406

Strand: Reverse

Name: pepD [H]

Synonym: YPN_0865

Alternate gene names: 108811030

Gene position: 1010406-1008946 (Counterclockwise)

Preceding gene: 108811032

Following gene: 108811028

Centisome position: 22.28

GC content: 48.6

Gene sequence:

>1461_bases
GTGTCTGAACTGTCTCAACTTTCGCCTCAGCCGTTGTGGGATATTTTTGCAAAAATTTGTTCTATCCCACATCCCTCTTA
CCATGAAGAAGCGCTGGCACAATATATTGTTACCTGGGCCAAAGAGAAAGGCCTGCATGCCGAGCGTGATCAGGTCGGTA
ATATCCTGCTGCGTAAACCTGCCACTAAAGGGATGGAAAACCGCAAGCCTGTTGCACTGCAAGCGCATTTAGATATGGTG
CCACAGAAAAATAATGACACGGTACATGACTTTACCAAAGATCCTATCCAGCCTTATATCGACGGCGAATGGGTGAAAGC
CCGTGGTACCACATTAGGCGCAGATAATGGTATTGGTATGGCATCCGCTCTGGCAGTGTTATCTGATGACCGCGTTGAGC
ATGGGCCACTAGAAGTGTTGTTAACCATGACCGAAGAAGCCGGTATGGATGGTGCCTTCGGCCTGCAACCTAATTGGCTG
AAAGCCGATATTCTGATCAATACCGATTCTGAGCAGGAAGGCGAAATCTACATGGGCTGTGCTGGTGGTATTGATTTCAT
CACCACCATGCCGCTACAGCGGGAAGCTATCCCTGCGGGCTATCAAACACTAAAATTGACGATCAAAGGCCTAAAAGGCG
GCCACTCAGGTGCGGATATCCATTTAGGTTTAGGTAACGCCAACAAACTGCTGGCCCGCTTCCTGTTTGAACAAGCAAAA
GATTTAGATCTGCGGGTGCTGGATCTGAATGGCGGTACTTTACGTAACGCAATTCCACGGGAAGGTCACGTAACACTGGC
TGTTGCCGCAGACAAAGTGGAACAGCTGAAAAAACTGAGCCAGAATTACCTGGCAACGTTGAAAGACGAGTTGATCGCGG
TCGAAAAAAATCTGACCCTAGTACTCGAACCCGTCTCTACCGAGACGAAAGCACTGACTAAAGAGACTCAACAGCGTTTT
GTCGCATTACTGAATGCCACGCCAAATGGTGTGATCCGCATGAGTGATGCGGTTAAAGGTGTCGTAGAAACCTCACTTAA
CGTGGGTGTTGTTACGATGAATGAGCATGAAGCAGAAATTGTCTGCCTGATTCGTTCCCTGATCGACAGCGGTAAAGATT
ACGTAGCCAGTATGCTGACCGCAATTGGTGAATTAGCGGGTGCCAAAACATCGCCAAGCGGCGGCTATCCTGGCTGGCAA
CCGGATCCAACGTCACCGGTCATGGCACTGGTACGGGAAACCTACCAAAAACTGTTCAACAAAACGCCTAACATCATGGT
TATCCATGCCGGTCTGGAATGTGGTTTGTTCAAAAAACCCTATCCTAACATGGACATGGTGTCGATTGGGCCAACCATGA
CCGGCCCGCATTCACCAGATGAACAAGTTCATATTGAGAGCGTTGGTCAATATTGGCAGTTATTAACCGCCCTGCTGAAA
GCGATACCTGAACGTACATAA

Upstream 100 bases:

>100_bases
CAAGCCAGTTATGCCAAGTAAGTTAAAATAAAGATTTAACATTCCATCTCATTAAATCTTTATACATCAATTAATTACAC
CCCATCACAGGAGACTTACA

Downstream 100 bases:

>100_bases
CCGTATTTAAGCGGGCTTTAATAGCCAAAATAATTACCGTTACAAGACAAGCCCGATGAACTGACACACACCAGTGATTC
GGGCAAATGGGTGTTATTTA

Product: aminoacyl-histidine dipeptidase

Products: NA

Alternate protein names: Beta-alanyl-histidine dipeptidase; Carnosinase; Cysteinylglycinase; Peptidase D; Xaa-His dipeptidase; X-His dipeptidase [H]

Number of amino acids: Translated: 486; Mature: 485

Protein sequence:

>486_residues
MSELSQLSPQPLWDIFAKICSIPHPSYHEEALAQYIVTWAKEKGLHAERDQVGNILLRKPATKGMENRKPVALQAHLDMV
PQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLSDDRVEHGPLEVLLTMTEEAGMDGAFGLQPNWL
KADILINTDSEQEGEIYMGCAGGIDFITTMPLQREAIPAGYQTLKLTIKGLKGGHSGADIHLGLGNANKLLARFLFEQAK
DLDLRVLDLNGGTLRNAIPREGHVTLAVAADKVEQLKKLSQNYLATLKDELIAVEKNLTLVLEPVSTETKALTKETQQRF
VALLNATPNGVIRMSDAVKGVVETSLNVGVVTMNEHEAEIVCLIRSLIDSGKDYVASMLTAIGELAGAKTSPSGGYPGWQ
PDPTSPVMALVRETYQKLFNKTPNIMVIHAGLECGLFKKPYPNMDMVSIGPTMTGPHSPDEQVHIESVGQYWQLLTALLK
AIPERT

Sequences:

>Translated_486_residues
MSELSQLSPQPLWDIFAKICSIPHPSYHEEALAQYIVTWAKEKGLHAERDQVGNILLRKPATKGMENRKPVALQAHLDMV
PQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLSDDRVEHGPLEVLLTMTEEAGMDGAFGLQPNWL
KADILINTDSEQEGEIYMGCAGGIDFITTMPLQREAIPAGYQTLKLTIKGLKGGHSGADIHLGLGNANKLLARFLFEQAK
DLDLRVLDLNGGTLRNAIPREGHVTLAVAADKVEQLKKLSQNYLATLKDELIAVEKNLTLVLEPVSTETKALTKETQQRF
VALLNATPNGVIRMSDAVKGVVETSLNVGVVTMNEHEAEIVCLIRSLIDSGKDYVASMLTAIGELAGAKTSPSGGYPGWQ
PDPTSPVMALVRETYQKLFNKTPNIMVIHAGLECGLFKKPYPNMDMVSIGPTMTGPHSPDEQVHIESVGQYWQLLTALLK
AIPERT
>Mature_485_residues
SELSQLSPQPLWDIFAKICSIPHPSYHEEALAQYIVTWAKEKGLHAERDQVGNILLRKPATKGMENRKPVALQAHLDMVP
QKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLSDDRVEHGPLEVLLTMTEEAGMDGAFGLQPNWLK
ADILINTDSEQEGEIYMGCAGGIDFITTMPLQREAIPAGYQTLKLTIKGLKGGHSGADIHLGLGNANKLLARFLFEQAKD
LDLRVLDLNGGTLRNAIPREGHVTLAVAADKVEQLKKLSQNYLATLKDELIAVEKNLTLVLEPVSTETKALTKETQQRFV
ALLNATPNGVIRMSDAVKGVVETSLNVGVVTMNEHEAEIVCLIRSLIDSGKDYVASMLTAIGELAGAKTSPSGGYPGWQP
DPTSPVMALVRETYQKLFNKTPNIMVIHAGLECGLFKKPYPNMDMVSIGPTMTGPHSPDEQVHIESVGQYWQLLTALLKA
IPERT

Specific function: Dipeptidase with broad substrate specificity. Requires dipeptide substrates with an unblocked N-terminus and the amino group in the alpha or beta position. Non-protein amino acids and proline are not accepted in the C-terminal position, whereas some dipep

COG id: COG2195

COG function: function code E; Di- and tripeptidases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20C family [H]

Homologues:

Organism=Escherichia coli, GI1786432, Length=485, Percent_Identity=78.3505154639175, Blast_Score=800, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002933
- InterPro:   IPR011650
- InterPro:   IPR001160 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: =3.4.13.3 [H]

Molecular weight: Translated: 52994; Mature: 52862

Theoretical pI: Translated: 5.46; Mature: 5.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSELSQLSPQPLWDIFAKICSIPHPSYHEEALAQYIVTWAKEKGLHAERDQVGNILLRKP
CCCHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCEEEECC
ATKGMENRKPVALQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGM
CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCH
ASALAVLSDDRVEHGPLEVLLTMTEEAGMDGAFGLQPNWLKADILINTDSEQEGEIYMGC
HHHHHHHHCCCCCCCCEEEEEEEHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEE
AGGIDFITTMPLQREAIPAGYQTLKLTIKGLKGGHSGADIHLGLGNANKLLARFLFEQAK
CCCCHHHHCCCCCHHCCCCCCEEEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCC
DLDLRVLDLNGGTLRNAIPREGHVTLAVAADKVEQLKKLSQNYLATLKDELIAVEKNLTL
CCCEEEEECCCCCHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHEEEECCCEE
VLEPVSTETKALTKETQQRFVALLNATPNGVIRMSDAVKGVVETSLNVGVVTMNEHEAEI
EEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHCCCCEEEEEECCCCHHH
VCLIRSLIDSGKDYVASMLTAIGELAGAKTSPSGGYPGWQPDPTSPVMALVRETYQKLFN
HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
KTPNIMVIHAGLECGLFKKPYPNMDMVSIGPTMTGPHSPDEQVHIESVGQYWQLLTALLK
CCCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEHHHHHHHHHHHHHHHH
AIPERT
HCCCCC
>Mature Secondary Structure 
SELSQLSPQPLWDIFAKICSIPHPSYHEEALAQYIVTWAKEKGLHAERDQVGNILLRKP
CCHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCEEEECC
ATKGMENRKPVALQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGM
CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCH
ASALAVLSDDRVEHGPLEVLLTMTEEAGMDGAFGLQPNWLKADILINTDSEQEGEIYMGC
HHHHHHHHCCCCCCCCEEEEEEEHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEE
AGGIDFITTMPLQREAIPAGYQTLKLTIKGLKGGHSGADIHLGLGNANKLLARFLFEQAK
CCCCHHHHCCCCCHHCCCCCCEEEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCC
DLDLRVLDLNGGTLRNAIPREGHVTLAVAADKVEQLKKLSQNYLATLKDELIAVEKNLTL
CCCEEEEECCCCCHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHEEEECCCEE
VLEPVSTETKALTKETQQRFVALLNATPNGVIRMSDAVKGVVETSLNVGVVTMNEHEAEI
EEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHCCCCEEEEEECCCCHHH
VCLIRSLIDSGKDYVASMLTAIGELAGAKTSPSGGYPGWQPDPTSPVMALVRETYQKLFN
HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
KTPNIMVIHAGLECGLFKKPYPNMDMVSIGPTMTGPHSPDEQVHIESVGQYWQLLTALLK
CCCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEHHHHHHHHHHHHHHHH
AIPERT
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1695895; 9278503; 2651887 [H]