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The map label for this gene is ybeY [C]

Identifier: 108800421

GI number: 108800421

Start: 3665810

End: 3666343

Strand: Reverse

Name: ybeY [C]

Synonym: Mmcs_3455

Alternate gene names: 108800421

Gene position: 3666343-3665810 (Counterclockwise)

Preceding gene: 108800422

Following gene: 108800420

Centisome position: 64.26

GC content: 64.98

Gene sequence:

>534_bases
ATGAGCATCGAGGTGTCCAACGAATCGGGCATCGACGTCTCCGAGGAGGAGTTGATCAGCGTCGCCCGGTTCGTCATCGA
GAAGATGAACGTCAACCCGGCCGCCGAACTGTCGATGGTCCTGCTCGACACGTCGTCGATGGCCGATCTGCACATGCGCT
GGATGGATCTGCCCGGCCCGACCGACGTGATGAGCTTCCCGATGGACGAGCTCGAACCCGGCGGCCGCCCCGATGCGCCC
GAACCGGGTCCCGCCATGCTCGGCGACATCGTGCTGTGCCCCGAATTCGCCGCGAAACAGGCGGAGACGGCGGGCCATTC
GCTGGGCCACGAACTGGCGCTGCTGACGGTGCACGGCGTCCTGCACCTGCTGGGCTACGACCACGCCGAACCCGACGAGG
AGAAAGAGATGTTCGCGTTGCAGCGTGAACTGCTCGAGGAGTGGGTGGCCCATCAGGTCGAGGCGTATCACCTCGACCGT
CAGACCGAGCGAGACCGGCGGCTGCTCGACAAGTCCCGGTACTTCGACGAATGA

Upstream 100 bases:

>100_bases
GTCGGCGAAATCGTCGACGCGTACGCCAGATTCGAGGAGCCCGCACAGCTGAACCGGGCCCAGCGGCGTGCGTCCAACGG
CCGGTCGCGGCGGTAGCGCG

Downstream 100 bases:

>100_bases
GCGGACTTCCCCAACTCATCGGAGTGATCGCGCTCGTCGCGTTCGGTGGGCTGTTCGCGGCTATCGACGCCGCGCTGAGC
ACGGTGTCCATGGCCCGGGT

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 176

Protein sequence:

>177_residues
MSIEVSNESGIDVSEEELISVARFVIEKMNVNPAAELSMVLLDTSSMADLHMRWMDLPGPTDVMSFPMDELEPGGRPDAP
EPGPAMLGDIVLCPEFAAKQAETAGHSLGHELALLTVHGVLHLLGYDHAEPDEEKEMFALQRELLEEWVAHQVEAYHLDR
QTERDRRLLDKSRYFDE

Sequences:

>Translated_177_residues
MSIEVSNESGIDVSEEELISVARFVIEKMNVNPAAELSMVLLDTSSMADLHMRWMDLPGPTDVMSFPMDELEPGGRPDAP
EPGPAMLGDIVLCPEFAAKQAETAGHSLGHELALLTVHGVLHLLGYDHAEPDEEKEMFALQRELLEEWVAHQVEAYHLDR
QTERDRRLLDKSRYFDE
>Mature_176_residues
SIEVSNESGIDVSEEELISVARFVIEKMNVNPAAELSMVLLDTSSMADLHMRWMDLPGPTDVMSFPMDELEPGGRPDAPE
PGPAMLGDIVLCPEFAAKQAETAGHSLGHELALLTVHGVLHLLGYDHAEPDEEKEMFALQRELLEEWVAHQVEAYHLDRQ
TERDRRLLDKSRYFDE

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Escherichia coli, GI1786880, Length=111, Percent_Identity=37.8378378378378, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 19896; Mature: 19764

Theoretical pI: Translated: 4.15; Mature: 4.15

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIEVSNESGIDVSEEELISVARFVIEKMNVNPAAELSMVLLDTSSMADLHMRWMDLPGP
CEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHEEHEECCCHHHHHHHHHHCCCCC
TDVMSFPMDELEPGGRPDAPEPGPAMLGDIVLCPEFAAKQAETAGHSLGHELALLTVHGV
HHHHHCCHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LHLLGYDHAEPDEEKEMFALQRELLEEWVAHQVEAYHLDRQTERDRRLLDKSRYFDE
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SIEVSNESGIDVSEEELISVARFVIEKMNVNPAAELSMVLLDTSSMADLHMRWMDLPGP
EEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHEEHEECCCHHHHHHHHHHCCCCC
TDVMSFPMDELEPGGRPDAPEPGPAMLGDIVLCPEFAAKQAETAGHSLGHELALLTVHGV
HHHHHCCHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LHLLGYDHAEPDEEKEMFALQRELLEEWVAHQVEAYHLDRQTERDRRLLDKSRYFDE
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA