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The map label for this gene is soxC [H]

Identifier: 108797864

GI number: 108797864

Start: 981468

End: 982664

Strand: Reverse

Name: soxC [H]

Synonym: Mmcs_0889

Alternate gene names: 108797864

Gene position: 982664-981468 (Counterclockwise)

Preceding gene: 108797865

Following gene: 108797855

Centisome position: 17.22

GC content: 71.51

Gene sequence:

>1197_bases
GTGACGGTGATCGCCTCCGCCGACGACGCTCTCGACGTCGCGGCGAAACTGTCCGCGGAGTTCGACGCCGAGGCCTCGGC
CCGTGACGCTGAGCGGCAGTTGCCGCACGAGCAGATCAAGGCGCTCAAAGAGTCCGGGCTGCTGGCGATCTCGGTGCCCG
CCGAACACGGCGGCATCGACGCACCCGCCACCGTGCTGGCCGAGGTGTTCCGGCTGATCGCCCACGCCGATCCGTCGCTG
TCGCAGATTCCGCACTCGCACTTCGTATTCCTCGAGGCGCTGCGACTGCAGGGCACCGCCGATCAGCAGGCGTACTTCTA
CCGGCAGGTGCTCGACGGCGCGCTGCTGGCCAACGCGCAGTCCGAGCGCGGACCGCATCCGATCGACGTCGACACCACGA
CGCTGACGCGCCGATCGTCGGGTGACTACGTGCTGACCGGCCGCAAGTTCTACTCGACCGGTGCGCTGTTCGCGGACTGG
CTGGTGGTGCGGGCGTCGCTCGACGACGGGTCGGTGCCGACGGCGTCGACACCCAAGGCGGTGGCGTTCGTGCCGCGTGA
CGCCGACGGGGTGGACGTCGCCGACGACTGGGAGGGGATGGGTCAGCGGACGACGGCGTCGGGCACGGTGACGCTCGCCG
ACGTCGCGGTGCCGGCCGAGCATGTCGTGCCGTTCTCGCCGATCTTCGCCGAGCCGACGACCTACGGCGCCCGGGCGCAG
TTGCTGCACAGCGCGATCGACGTCGGTATCGCGACGGGGGCGCTGGCCGCCGGGGTGCGCCAGGCCGAACGCGCCCGCCC
GCACTTCGAGGCGAACGTGGCCACGGCCGTCGACGATCCGACACTCATCCAGGCCGCCGCCGAGTTGACCGTCACCGTCC
GCGGCGCCCAAGCCCTGCTGGTCGAGGCCGCCCGCGCGGTGGACGCCGCGACCGAACACCTCACCGAGGAGTCGGCGGCC
GCGGCGTCGGTGGCCGTCGCCGTCGCGAAGGTCGCGGCGGTGCGGGCCTCGCTGGAAGCCGCGACCGGGCTGTTCGAATT
GGGCGGTACGCGAAGCGCTTCGGTGTCGGGCAACCTGTCGCGGTACTGGCGTGACGCCCGCACGCACACCCTTCACGATC
CGGTGCGGTGGAAGCTGCAGCACATCGGCCGCTACACGCTGTCGGGTACGAGGCCTCCGCGCCACGGCCAAATCTGA

Upstream 100 bases:

>100_bases
TCGGTGAGGGTGTCGTGCCGATCCTGCGCGAGCGCGGACTGTTCAAGGGTCAGGCGACGTCGGGGTCCCCGGCGCACATC
CCGTTCATCGGTGCGACGCG

Downstream 100 bases:

>100_bases
GGCTGCCCCGACTTACGTAACGCCACGGCGGAGTATCCCCGCGAGAACCGCCATGGCGTTACGCAAGTCGGACGCGCTAG
GTGTACAGGGTGATCGGCTG

Product: acyl-CoA dehydrogenase, type 2-like protein

Products: gamma-butyrobetaine; Acceptor; gamma-butyrobetainyl-CoA [C]

Alternate protein names: DBT sulfur dioxygenase [H]

Number of amino acids: Translated: 398; Mature: 397

Protein sequence:

>398_residues
MTVIASADDALDVAAKLSAEFDAEASARDAERQLPHEQIKALKESGLLAISVPAEHGGIDAPATVLAEVFRLIAHADPSL
SQIPHSHFVFLEALRLQGTADQQAYFYRQVLDGALLANAQSERGPHPIDVDTTTLTRRSSGDYVLTGRKFYSTGALFADW
LVVRASLDDGSVPTASTPKAVAFVPRDADGVDVADDWEGMGQRTTASGTVTLADVAVPAEHVVPFSPIFAEPTTYGARAQ
LLHSAIDVGIATGALAAGVRQAERARPHFEANVATAVDDPTLIQAAAELTVTVRGAQALLVEAARAVDAATEHLTEESAA
AASVAVAVAKVAAVRASLEAATGLFELGGTRSASVSGNLSRYWRDARTHTLHDPVRWKLQHIGRYTLSGTRPPRHGQI

Sequences:

>Translated_398_residues
MTVIASADDALDVAAKLSAEFDAEASARDAERQLPHEQIKALKESGLLAISVPAEHGGIDAPATVLAEVFRLIAHADPSL
SQIPHSHFVFLEALRLQGTADQQAYFYRQVLDGALLANAQSERGPHPIDVDTTTLTRRSSGDYVLTGRKFYSTGALFADW
LVVRASLDDGSVPTASTPKAVAFVPRDADGVDVADDWEGMGQRTTASGTVTLADVAVPAEHVVPFSPIFAEPTTYGARAQ
LLHSAIDVGIATGALAAGVRQAERARPHFEANVATAVDDPTLIQAAAELTVTVRGAQALLVEAARAVDAATEHLTEESAA
AASVAVAVAKVAAVRASLEAATGLFELGGTRSASVSGNLSRYWRDARTHTLHDPVRWKLQHIGRYTLSGTRPPRHGQI
>Mature_397_residues
TVIASADDALDVAAKLSAEFDAEASARDAERQLPHEQIKALKESGLLAISVPAEHGGIDAPATVLAEVFRLIAHADPSLS
QIPHSHFVFLEALRLQGTADQQAYFYRQVLDGALLANAQSERGPHPIDVDTTTLTRRSSGDYVLTGRKFYSTGALFADWL
VVRASLDDGSVPTASTPKAVAFVPRDADGVDVADDWEGMGQRTTASGTVTLADVAVPAEHVVPFSPIFAEPTTYGARAQL
LHSAIDVGIATGALAAGVRQAERARPHFEANVATAVDDPTLIQAAAELTVTVRGAQALLVEAARAVDAATEHLTEESAAA
ASVAVAVAKVAAVRASLEAATGLFELGGTRSASVSGNLSRYWRDARTHTLHDPVRWKLQHIGRYTLSGTRPPRHGQI

Specific function: Part of a pathway to remove covalently bound sulfur from dibenzothiophene (DBT) without breaking carbon-carbon bonds. Sulfur dioxygenase which converts DBT to DBT-sulfone (DBTO2 or DBT 5,5-dioxide) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786223, Length=363, Percent_Identity=26.1707988980716, Blast_Score=68, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17508101, Length=354, Percent_Identity=22.0338983050847, Blast_Score=66, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17569725, Length=374, Percent_Identity=22.4598930481283, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24646207, Length=209, Percent_Identity=28.7081339712919, Blast_Score=65, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: 1.3.99.- [C]

Molecular weight: Translated: 41979; Mature: 41848

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVIASADDALDVAAKLSAEFDAEASARDAERQLPHEQIKALKESGLLAISVPAEHGGID
CEEEECCCHHHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHCCCEEEECCCCCCCCC
APATVLAEVFRLIAHADPSLSQIPHSHFVFLEALRLQGTADQQAYFYRQVLDGALLANAQ
CHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
SERGPHPIDVDTTTLTRRSSGDYVLTGRKFYSTGALFADWLVVRASLDDGSVPTASTPKA
CCCCCCCCCCCCCEEEECCCCCEEEECCHHHCCCHHHHEEHEEEEECCCCCCCCCCCCCE
VAFVPRDADGVDVADDWEGMGQRTTASGTVTLADVAVPAEHVVPFSPIFAEPTTYGARAQ
EEEECCCCCCCCCCCCHHCCCCCEECCCEEEEEEEECCHHHCCCCCCCCCCCCCCCHHHH
LLHSAIDVGIATGALAAGVRQAERARPHFEANVATAVDDPTLIQAAAELTVTVRGAQALL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHEEEEECCHHHHH
VEAARAVDAATEHLTEESAAAASVAVAVAKVAAVRASLEAATGLFELGGTRSASVSGNLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
RYWRDARTHTLHDPVRWKLQHIGRYTLSGTRPPRHGQI
HHHHHHCCCCCCCHHHHHHHHCCCEEECCCCCCCCCCC
>Mature Secondary Structure 
TVIASADDALDVAAKLSAEFDAEASARDAERQLPHEQIKALKESGLLAISVPAEHGGID
EEEECCCHHHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHCCCEEEECCCCCCCCC
APATVLAEVFRLIAHADPSLSQIPHSHFVFLEALRLQGTADQQAYFYRQVLDGALLANAQ
CHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
SERGPHPIDVDTTTLTRRSSGDYVLTGRKFYSTGALFADWLVVRASLDDGSVPTASTPKA
CCCCCCCCCCCCCEEEECCCCCEEEECCHHHCCCHHHHEEHEEEEECCCCCCCCCCCCCE
VAFVPRDADGVDVADDWEGMGQRTTASGTVTLADVAVPAEHVVPFSPIFAEPTTYGARAQ
EEEECCCCCCCCCCCCHHCCCCCEECCCEEEEEEEECCHHHCCCCCCCCCCCCCCCHHHH
LLHSAIDVGIATGALAAGVRQAERARPHFEANVATAVDDPTLIQAAAELTVTVRGAQALL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHEEEEECCHHHHH
VEAARAVDAATEHLTEESAAAASVAVAVAKVAAVRASLEAATGLFELGGTRSASVSGNLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
RYWRDARTHTLHDPVRWKLQHIGRYTLSGTRPPRHGQI
HHHHHHCCCCCCCHHHHHHHHCCCEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: crotono-betaine; reduced acceptor; crotonobetainyl-CoA [C]

Specific reaction: reduced acceptor + crotono-betaine = Acceptor + gamma-butyrobetaine reduced acceptor + crotonobetainyl-CoA = Acceptor + gamma-butyrobetainyl-CoA [C]

General reaction: Oxidoreductases; Acting on the CH-CH group of donors; With other acceptors [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961424; 7574582 [H]