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The map label for this gene is ygiD [H]

Identifier: 108797744

GI number: 108797744

Start: 819312

End: 820160

Strand: Reverse

Name: ygiD [H]

Synonym: Mmcs_0765

Alternate gene names: 108797744

Gene position: 820160-819312 (Counterclockwise)

Preceding gene: 108797745

Following gene: 108797741

Centisome position: 14.38

GC content: 67.73

Gene sequence:

>849_bases
ATGGACCTGATGCCGGCGGCGTTCATCGGACACGGCAGCCCCATGAACGCGCTCGAAGTCAACCGCTACACCTCGGCCTG
GCGAGCGTTCGGTGAGCAGGTCACCCGTCCGCGCGCGATCCTGGTCATCAGCGCGCACTGGTACATCAACGCGACCGCGG
TCACGGCGATGCCGCGGCCCAGGACGATCCACGACTTCTACGGGTTCCCGCAGGAACTGTTCGACGTGCAGTATCCCGCC
CCGGGCCTGCCCGGACTCGCCGACGAGGTCAGCGAGGTCGTCCACCCGACGTGGGTGGGCGCCGACGTCGACAGCTGGGG
CATCGATCACGGCACCTGGTCGGTGCTGGTCCACGCCTTCCCCGACGCGTCGATACCCGTCGTCCAGCTTTCGGTCAACG
CCGACAAACCGCTCGAGTACCACCTGGAACTCGGCGCCAAGCTGGCCCCGCTGCGCGAACGCGGCGTGCTGATCCTGGCC
AGCGGCAACGTCGTTCACAATCTGCGGGCGATGGACTGGAACCTCGACACCGGCTACGACTGGGCCCACCGATTCGACGA
CGCCGCCCGGGAGGTGATCCTGTCGGAGCCCTCACGGGCGCCGGGTCTACACGGTCACACCGACTTCGACATCGCGGTGC
CGACCCCCGACCACTTCATCCCGTGGCTGTATCTGGCGGGGCTGGCGTCGACCGCCGCCGACAGTGTCGACATCCTCGTC
GACGGCTACTCCTACGGATCCCTGTCGATGACGGCCTACACGCTGGGAGCGGCTACGGTCACCGGGTCCGAAGACGCTGC
CGCCCAACAGCAACCACCTCAGGCACCGGCCGACGCCTCGAACATCTGA

Upstream 100 bases:

>100_bases
GTGGGCGGCGCCGTCGAGGTGGTGCGCAGGATGCGCCGCAAGCCCGAGCCCGCCGGGCAGCGCTAGGCATGGCGCGGTCA
TCGCGTGGGATGGTGGTGGT

Downstream 100 bases:

>100_bases
CGCTAGGGCCAGCGGGTGTCGAGGATGTCCAGGGCATTCGGCAGCTTCGCGCGGTAGCGCGCCCGGTCGGCCTGTTTGAA
CGGCACCCACCACGGCGCCT

Product: extradiol ring-cleavage dioxygenase III subunit B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MDLMPAAFIGHGSPMNALEVNRYTSAWRAFGEQVTRPRAILVISAHWYINATAVTAMPRPRTIHDFYGFPQELFDVQYPA
PGLPGLADEVSEVVHPTWVGADVDSWGIDHGTWSVLVHAFPDASIPVVQLSVNADKPLEYHLELGAKLAPLRERGVLILA
SGNVVHNLRAMDWNLDTGYDWAHRFDDAAREVILSEPSRAPGLHGHTDFDIAVPTPDHFIPWLYLAGLASTAADSVDILV
DGYSYGSLSMTAYTLGAATVTGSEDAAAQQQPPQAPADASNI

Sequences:

>Translated_282_residues
MDLMPAAFIGHGSPMNALEVNRYTSAWRAFGEQVTRPRAILVISAHWYINATAVTAMPRPRTIHDFYGFPQELFDVQYPA
PGLPGLADEVSEVVHPTWVGADVDSWGIDHGTWSVLVHAFPDASIPVVQLSVNADKPLEYHLELGAKLAPLRERGVLILA
SGNVVHNLRAMDWNLDTGYDWAHRFDDAAREVILSEPSRAPGLHGHTDFDIAVPTPDHFIPWLYLAGLASTAADSVDILV
DGYSYGSLSMTAYTLGAATVTGSEDAAAQQQPPQAPADASNI
>Mature_282_residues
MDLMPAAFIGHGSPMNALEVNRYTSAWRAFGEQVTRPRAILVISAHWYINATAVTAMPRPRTIHDFYGFPQELFDVQYPA
PGLPGLADEVSEVVHPTWVGADVDSWGIDHGTWSVLVHAFPDASIPVVQLSVNADKPLEYHLELGAKLAPLRERGVLILA
SGNVVHNLRAMDWNLDTGYDWAHRFDDAAREVILSEPSRAPGLHGHTDFDIAVPTPDHFIPWLYLAGLASTAADSVDILV
DGYSYGSLSMTAYTLGAATVTGSEDAAAQQQPPQAPADASNI

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=258, Percent_Identity=46.8992248062016, Blast_Score=241, Evalue=5e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 30560; Mature: 30560

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLMPAAFIGHGSPMNALEVNRYTSAWRAFGEQVTRPRAILVISAHWYINATAVTAMPRP
CCCCCCHHCCCCCCCCCEEHHHHHHHHHHHHHHHCCCEEEEEEEECEEEEEEEEEECCCC
RTIHDFYGFPQELFDVQYPAPGLPGLADEVSEVVHPTWVGADVDSWGIDHGTWSVLVHAF
CCHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCEEECCCCCCCCCCCCCEEEEEEEC
PDASIPVVQLSVNADKPLEYHLELGAKLAPLRERGVLILASGNVVHNLRAMDWNLDTGYD
CCCCCEEEEEEECCCCCEEEEEECCCEECCCCCCCEEEEECCCEEEEEEEEECCCCCCCC
WAHRFDDAAREVILSEPSRAPGLHGHTDFDIAVPTPDHFIPWLYLAGLASTAADSVDILV
HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE
DGYSYGSLSMTAYTLGAATVTGSEDAAAQQQPPQAPADASNI
ECCCCCCEEEEEEEEEEEEEECCCCCHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MDLMPAAFIGHGSPMNALEVNRYTSAWRAFGEQVTRPRAILVISAHWYINATAVTAMPRP
CCCCCCHHCCCCCCCCCEEHHHHHHHHHHHHHHHCCCEEEEEEEECEEEEEEEEEECCCC
RTIHDFYGFPQELFDVQYPAPGLPGLADEVSEVVHPTWVGADVDSWGIDHGTWSVLVHAF
CCHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCEEECCCCCCCCCCCCCEEEEEEEC
PDASIPVVQLSVNADKPLEYHLELGAKLAPLRERGVLILASGNVVHNLRAMDWNLDTGYD
CCCCCEEEEEEECCCCCEEEEEECCCEECCCCCCCEEEEECCCEEEEEEEEECCCCCCCC
WAHRFDDAAREVILSEPSRAPGLHGHTDFDIAVPTPDHFIPWLYLAGLASTAADSVDILV
HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE
DGYSYGSLSMTAYTLGAATVTGSEDAAAQQQPPQAPADASNI
ECCCCCCEEEEEEEEEEEEEECCCCCHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]